Extended Data Fig. 7: Transposable element (super)families enriched with JA-induced differentially methylated regions.
From: Long-lasting memory of jasmonic acid-dependent immunity requires DNA demethylation and ARGONAUTE1
Shown are transposable element (TE) (super)families enriched with JA-induced differentially methylated regions (DMRs) at CHH (a), all-C (b), CG (c) and CHG (d) sequence contexts. For details about DMR selection, see legend to Fig. 5. Enriched TE families for CHH and all-C contexts are displayed in Fig. 5d,e. Graphs plot statistical significance against the corresponding fold-enrichment, represented by mean –log10(Padj) values (± SEM) and mean fold enrichment values (± SEM), respectively. Enrichment is expressed relative to the background of all genome annotated TEs (TAIR v10). Labelled data points indicate TE (super)families with a mean –log10(Padj) > -log10(0.05) (red dashed line). Brightly coloured data points indicate TE (super)families that were significantly (Padj ≤ 0.05) overrepresented in 1 (red), 2 (yellow) or 3 (green) comparisons, respectively.
