Extended Data Fig. 2: Spatial RNA-seq integrated UMAPs by treatment and dataset. | Nature Plants

Extended Data Fig. 2: Spatial RNA-seq integrated UMAPs by treatment and dataset.

From: Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis

Extended Data Fig. 2

a, UMAP of 28,564 spatial voxels from the integrated Seurat object of all root harvests. The identities of 17 unique clusters are represented by different colors according to cluster identity. b, UMAP of 28,564 spatial voxels from the integrated Seurat object of all root harvests. Different colors correspond to the original dataset. c, Barplot exhibiting the number of cells that can be assigned to a specific cluster for each of the individual capture areas within the integrated spatial dataset.

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