Fig. 2: Annotation of germinating embryo cell types using literature-curated marker transcripts.
From: Establishment of single-cell transcriptional states during seed germination
a, Uniform manifold approximation and projection (UMAP) dimensional reduction and visualization of 12,798 cells in 15 clusters. b, UMAP dimensional reduction and visualization of cells across three time points—12, 24 and 48 h after placement to light—showing the temporal changes in cell and cluster detection. c, Bubble plots showing the enrichment of expression of representative cell type-specific marker transcripts in 15 clusters and the percentage of cells from the two biological replicates (replicate 1, R1; replicate 2, R2) within each cluster at each time point. Marker transcripts were identified from published studies. d, Spatial distribution of cell clusters in the Arabidopsis embryo. SAM, shoot apical meristem; QC, quiescent centre.
