Extended Data Fig. 3: B73 TF diversity panel and DAP-CRM analysis.
From: Transcription factor binding divergence drives transcriptional and phenotypic variation in maize
a, Heatmap showing Pearson correlation of genome-wide binding profiles for 66 TFs in the B73 TF diversity panel. b, Phylogeny, tissue-specific RNA-expression (TPM; transcripts per million), and binding motifs of selected SBP TFs tested in maize DAP-seq. Expression patterns are often different for family members with similar motifs. c, Genome browser screenshot of SBP TFs shown in b at the TSH1 locus. d, Histogram showing the size distribution of DAP-CRMs. The dotted line indicates the average size of all DAP-CRMs. e, Histogram of the number of TFs per DAP-CRM. The black dotted line indicates the average number of TFs per DAP-CRM. The inset shows a close-up on the number of TFs from 20-63 TFs per DAP-CRM. f, Frequency of DAP-CRMs versus randomly shuffled CRMs of the same size within a 3 kb window surrounding the TSS.
