Table 1 Description of the samples and data sets used in this study
From: Tracing back ancient oral microbiomes and oral pathogens using dental pulps from ancient teeth
Sample type | Origin | Origin | Period/yearsbefore present | Numberof samples | Reference | PUBMED ID | SRA accession |
|---|---|---|---|---|---|---|---|
Completeground teeth | Published works | England | 750–650 | 6 | Adler et al.9 | 23416520 | ERP002107 |
Germany | 1000–400 | ||||||
7400–6725 | |||||||
4150–3600 | |||||||
Germany | 800–1100 | 14 | Warinner et al.8 | 24562188 | SRP029257 | ||
Dental root canal | Brazil | Modern | 17 | Santos et al.10 | 22132218 | ERP000669 | |
Dental pulp | This study | France | First World War (WWI) | 6 | N/A | N/A | SRP068830 |
Nigeria | 500 | 15 | |||||
France | Modern | 2 | |||||
Dental calculus | Published works | England | 750–650 | 55 | Adler et al.9 | 23416520 | ERP002107 |
Germany | 1000–400 | ||||||
1100–850 4100–2800 | |||||||
4150–3600 4450–4000 | |||||||
7400–6725 7550–5450 | |||||||
Germany | 800–1100 | 4 | Warinner et al.8 | 24562188 | SRP029257 | ||
Saliva | US | Modern | 29 | Pride et al.11 | 22158393 | SRA024393 | |
US | Modern | 9 | The HMP (Gevers et al.)12 | 22904687 | SRP002395 | ||
Oral cavity (diverse regions) | US | Modern | 68 | The HMP (Gevers et al.)12 | 22904687 | SRP002395 | |
Soil | Germany | Modern | 18 | Will et al.13 | 20729324 | SRA020168 | |
Different environments | Modern | 151 | Bates et al.14 | 21085198 | N/A |
