Table 1 Top ten genera by network interconnectedness (Hubs) stratified by clinical state
Rank | Genus | Mean (%) | Median (%) | Stdev | Prev. (%) | RA rank | Prev. rank | Metab.a | |
|---|---|---|---|---|---|---|---|---|---|
Baseline | 1 | Johnsonella | 0.098 | 0.016 | 0.206 | 72.5 | 29 | 18 | − |
2 | Veillonella | 3.455 | 1.460 | 4.994 | 95.0 | 6 | 5 | − | |
3 | Propionibacterium | 0.023 | 0.005 | 0.052 | 77.5 | 43 | 16 | − | |
4 | Prevotella | 12.537 | 6.257 | 15.089 | 100.0 | 2 | 1 | − | |
5 | Pseudomonas | 41.289 | 46.880 | 36.709 | 92.5 | 1 | 7 | + | |
6 | Bifidobacterium | 0.733 | 0.020 | 2.750 | 77.5 | 15 | 15 | − | |
7 | Derxia | 0.024 | 0.000 | 0.153 | 12.5 | 42 | 55 | + | |
8 | Mogibacterium | 0.111 | 0.002 | 0.333 | 55.0 | 28 | 32 | − | |
9 | Aeromonas | 0.000 | 0.000 | 0.001 | 6.3 | 94 | 70 | + | |
10 | Streptococcus | 9.705 | 5.769 | 11.204 | 98.8 | 3 | 3 | + | |
Unwell | 1 | Mycoplasma | 0.007 | 0.000 | 0.068 | 5.3 | 56 | 80 | − |
2 | Halomonas | 0.001 | 0.000 | 0.003 | 18.1 | 94 | 51 | + | |
3 | Enterococcus | 1.715 | 0.006 | 5.806 | 57.9 | 11 | 25 | +/− | |
4 | Solobacterium | 0.499 | 0.035 | 1.812 | 72.5 | 16 | 10 | − | |
5 | Helicobacter | 0.005 | 0.000 | 0.033 | 8.8 | 61 | 62 | + | |
6 | Pseudomonas | 30.790 | 13.553 | 34.454 | 84.2 | 1 | 7 | + | |
7 | Bifidobacterium | 1.575 | 0.010 | 5.768 | 68.4 | 12 | 13 | − | |
8 | Capnocytophaga | 0.139 | 0.004 | 0.392 | 57.3 | 29 | 28 | +/− | |
9 | Stenotrophomonas | 9.389 | 0.096 | 18.196 | 87.7 | 4 | 6 | + | |
10 | Porphyromonas | 1.060 | 0.002 | 5.884 | 57.9 | 14 | 26 | − | |
PE | 1 | Actinomyces | 2.311 | 0.517 | 3.661 | 100.0 | 9 | 6 | − |
2 | Bergeyella | 0.010 | 0.000 | 0.018 | 31.3 | 55 | 50 | + | |
3 | Leptotrichia | 0.039 | 0.004 | 0.072 | 75.0 | 37 | 25 | − | |
4 | Selenomonas | 0.015 | 0.000 | 0.027 | 31.3 | 49 | 49 | − | |
5 | Treponema | 0.004 | 0.000 | 0.011 | 18.8 | 63 | 61 | +/− | |
6 | Dialister | 0.046 | 0.002 | 0.127 | 50.0 | 36 | 39 | − | |
7 | Propionibacterium | 0.014 | 0.001 | 0.020 | 62.5 | 50 | 30 | − | |
8 | Johnsonella | 0.133 | 0.041 | 0.303 | 81.3 | 28 | 19 | − | |
9 | Prevotella | 9.927 | 7.086 | 12.885 | 100.0 | 3 | 2 | − | |
10 | Solobacterium | 0.077 | 0.020 | 0.137 | 87.5 | 31 | 15 | − |
