Table 3 Top ten genera by prevalence stratified by clinical state
Rank | Genus | Mean (%) | Median (%) | Stdev | Prev. (%) | RA rank | Hub rank | Metab.a | |
|---|---|---|---|---|---|---|---|---|---|
Baseline | 1 | Prevotella | 12.537 | 6.257 | 15.089 | 100.0 | 2 | 4 | − |
2 | Rothia | 6.383 | 2.002 | 13.623 | 100.0 | 4 | 54 | − | |
3 | Streptococcus | 9.705 | 5.769 | 11.204 | 98.8 | 3 | 10 | + | |
4 | Actinomyces | 2.419 | 0.666 | 4.089 | 98.8 | 8 | 19 | − | |
5 | Veillonella | 3.455 | 1.460 | 4.994 | 95.0 | 6 | 2 | − | |
6 | Gemella | 1.528 | 0.393 | 2.769 | 95.0 | 11 | 11 | +/− | |
7 | Pseudomonas | 41.289 | 46.880 | 36.709 | 92.5 | 1 | 5 | + | |
8 | Stenotrophomonas | 6.289 | 0.023 | 20.681 | 92.5 | 5 | 23 | + | |
9 | Staphylococcus | 1.076 | 0.011 | 4.598 | 90.0 | 14 | 41 | +/− | |
10 | Solobacterium | 0.485 | 0.041 | 1.034 | 85.0 | 18 | 25 | − | |
Unwell | 1 | Streptococcus | 12.074 | 5.016 | 14.122 | 98.8 | 3 | 25 | + |
2 | Rothia | 5.884 | 1.776 | 12.203 | 98.2 | 5 | 14 | − | |
3 | Prevotella | 15.143 | 6.885 | 19.744 | 96.5 | 2 | 16 | − | |
4 | Veillonella | 4.898 | 0.886 | 8.430 | 93.6 | 6 | 11 | − | |
5 | Actinomyces | 2.138 | 0.217 | 4.041 | 93.0 | 9 | 19 | − | |
6 | Stenotrophomonas | 9.389 | 0.096 | 18.196 | 87.7 | 4 | 9 | + | |
7 | Pseudomonas | 30.790 | 13.553 | 34.454 | 84.2 | 1 | 6 | + | |
8 | Staphylococcus | 2.631 | 0.015 | 9.910 | 81.3 | 8 | 99 | +/− | |
9 | Gemella | 1.306 | 0.020 | 3.857 | 81.3 | 13 | 12 | +/− | |
10 | Solobacterium | 0.499 | 0.035 | 1.812 | 72.5 | 16 | 4 | − | |
PE | 1 | Streptococcus | 14.127 | 9.869 | 13.198 | 100.0 | 2 | 22 | + |
2 | Prevotella | 9.927 | 7.086 | 12.885 | 100.0 | 3 | 9 | − | |
3 | Rothia | 6.466 | 0.480 | 15.744 | 100.0 | 4 | 35 | − | |
4 | Haemophilus | 4.755 | 0.023 | 17.451 | 100.0 | 6 | 52 | +/− | |
5 | Veillonella | 2.894 | 1.069 | 3.511 | 100.0 | 8 | 11 | − | |
6 | Actinomyces | 2.311 | 0.517 | 3.661 | 100.0 | 9 | 1 | − | |
7 | Staphylococcus | 0.474 | 0.099 | 0.984 | 100.0 | 17 | 36 | +/− | |
8 | Neisseria | 0.228 | 0.014 | 0.488 | 100.0 | 26 | 23 | + | |
9 | Pseudomonas | 36.645 | 33.068 | 36.134 | 93.8 | 1 | 30 | + | |
10 | Stenotrophomonas | 2.275 | 0.092 | 5.406 | 93.8 | 10 | 29 | + |
