Table 1 FISH probes and ribotags used
FISH probes/ribotags | Intended target taxon | Sequence of probe (5′→3′) | Formamide (%) | References |
|---|---|---|---|---|
EUB338 | Most bacteria | GCTGCCTCCCGTAGGAGT | 0 | Amann et al.7 |
NON338 | None | ACTCCTACGGGAGGCAGC | 45 | Wallner et al.8 |
Thau646 | Thauera | TCTGCCGTACTCTAGCCTT | 45 | Lajoie et al.43 |
Ribo_Thau1029_33a | Thauera | GTGTTCTGGCTCCCGAAGGCACCCTCGCCTCTC | N.D | This study |
Ribo_Thau1029_17 | Thauera | GTGTTCTGGCTCCCGAA | 45 | This study |
Ribo_Unk1029_33a | UPWRP_1 | TGCTTCGCGTCTCCGAAGAGCCGACCACCTTTC | N.D | This study |
Ribo_Unk1029_17 | UPWRP_1 | TGCTTCGCGTCTCCGAA | 50 | This study |
Halian2b | Haliangium | CCGACTTCTAGAGCAACTGA | 25 | McIlroy et al.41 |
Halian3b | Haliangium | CCAGTCACTCTTTAGGCGGC | 25 | McIlroy et al.41 |
Ribo_Halia1029_33a | UPWRP_2 | TCTCACTCGCTCCCGAAGGCACCCCGACATCTC | N.D | This study |
Ribo_Halia1029_17 | UPWRP_2 | TCTCACTCGCTCCCGAA | 40 | This study |
Halia183 | UPWRP_2 | GAAATCCGGAAACCTCACAGAC | 40c | This study |
