Fig. 7: SNP-based phylogenetic tree.
From: The sino-nasal warzone: transcriptomic and genomic studies on sino-nasal aspergillosis in dogs
SNP-based phylogenetic tree of the 26 isolates from eight SNA patients and from eight environmental isolates. The tree was inferred by using the maximum likelihood method based on the general time-reversible model. The tree with the highest log likelihood (−49,077.29) is shown and drawn to scale, with branch lengths measured in the number of substitutions per site. There was a total of 3826 nucleotide positions in the final data set. Evolutionary analyses were conducted in MEGA X71. Selected clades (A, B, C, D) and sub clades (B1, D1, D2) are depicted with letters and numbers. The dog and environmental isolates are indicated with a dog and house pictogram, respectively, whereas G, D, and E indicate the number of STRAf genotypes, dog isolates, and environmental isolates, respectively. Two isolates that were not grouped with isolates from the same STRAf genotype are denoted by a star (*). Isolates with a notable high-SNP density are denoted by a plus (+) symbol.
