Fig. 1: Bee model and their gut bacteriome at the phylotype level.
From: Host specificity and cophylogeny in the “animal-gut bacteria-phage” tripartite system
a Locations where bees are sampled. b Maximum likelihood phylogenetic tree comprising the three bee species based on concatenated coding nucleotide sequence (left tree) and the evolutionary timescale inferred by the TimeTree database (right tree). For the left tree, the branches marked by slashes are shortened 10-fold for an enlarged view of the terminal branches. c Taxonomic and functional profile of bee gut bacteriome. The taxonomic profile (left plot) shows the relative abundances of phylotypes; the functional profile (right plot) shows the sequencing depth of genes that are assigned to each category. Only the functions that show significant difference between the bee species are listed. d PCoA plot based on the pairwise Bray–Curtis dissimilarity between samples. The shape and color of the dots that represents individual samples in (c, d) are the same as (a, b).
