Table 3 Strains and primers required for knockdown of luxS gene

From: Mechanisms of S. agalactiae promoting G. vaginalis biofilm formation leading to recurrence of BV

Material

General characteristics

Source/purpose/reference

Strain

 ATCC13813

WT GBS

Purchased from ATCC website

 ΔGBS

ATCC13813ΔLuxS: Erm

Mutant, constructed in this study, ErmR

 DH5α

Escherichia coli Clone host strain

Takara Biotechnology (Dalian) Co., Ltd

Plasmid

 pSET4s

Thermosensitive suicide vector, SpeR

Takamatsu et al. 75

 pJDC9

Insertion vector, ErmR

JD Chen et al. 74

 pSET4s-luxS

Suicide vector, temperature-sensitive, ErmR and SpeR

pSET4s carrying the luxS-up, Erm and luxS-down fragments. Constructed in this study

 Primer

Sequence (5’ − 3’)

 

 LuxS-upF

tgaattcgagctcggtacccgtttagcttcttcttgactaagc

amplification of the upstream of luxS

 LuxS-upR

ccgtcttatctcccattatatcaagttttctccttttgtattacattc

amplification of the upstream of luxS

 LuxS-downF

acgggaggaaataattctatgtctaataaaaaataaaagtcaacttttgg

amplification of the downstream of luxS

 LuxS-downR

gcaggtcgactctagaggatccccttaatactggtaatgctagtctag

amplification of the downstream of luxS

 Erm-F

tgtaatacaaaaggagaaaacttgatataatgggagataagacgg

erm gene amplification

 Erm-R

ccaaaagttgacttttattttttattagacatagaattatttcctcccgt

erm gene amplification

 pSET4s-F

tagactagcattaccagtattaaggggatcctctagagtcgacctgc

pSET4s amplification

 pSET4s-R

gcttagtcaagaagaagctaaacgggtaccgagctcgaattcact

pSET4s amplification

 M13-F

gtaaaacgacggccagt

Fusion of pSET4S, luxS-up, Erm and luxS-down

 M13-R

aacagctatgaccatg

Fusion of pSET4S, luxS-up, Erm and luxS-down

 Lux-F

atgacaaaagaagttgtcgt

Detection of the mutant

 Lux-R

tcagacaatgtggcgc

Detection of the mutant

  1. The fragments luxS-up (701 bp), erm (965 bp), luxS-down (719 bp) and pSET4s (4506) were amplified by PCR using the primers luxS-upF/luxF-upR, Erm-F/Erm-R, luxS-downF/luxS-downR and pSET4s-F/pSET4s-R, respectively. The primers designed according to the sequences of the pSET4s plasmid and genome of the WC1535 GBS strain (Accession number NZ_GL636070). PCR amplification conditions were as follows: initial denaturation at 94 °C for 3 min; 26 cycles of 94 °C for 30 s, 59 °C for 30 s and 68 °C for 1–3 min; and final extension at 68 °C for 5 min.