Fig. 2: Metagenome-assembled genomes (MAGs) from vaginal metagenomes. | npj Biofilms and Microbiomes

Fig. 2: Metagenome-assembled genomes (MAGs) from vaginal metagenomes.

From: Strain-level variation among vaginal Lactobacillus crispatus and Lactobacillus iners as identified by comparative metagenomics

Fig. 2

a Stacked barplot showing the number of MAGs recovered from each species from the two cohorts. b Boxplots are faceted by species and colored by mgCSTs representing the number of species-specific reads needed to recover high-quality MAGs from metagenomic samples. c, d Maximum likelihood cladograms of L. crispatus (c) and L. iners (d) reconstructed based on core genomes. Branches are colored based on the phylogenetic clades and color strips from inner to outermost represent mgCSTs, antibiotic usage, sample collection timepoint, cohort and delivery outcome.

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