Table 1 Generalization of emergent properties in cross-feeding anoxic biofilms compared to independent feeding biofilms and unstructured environments (i.e., chemostat)

From: Diffusion-based mechanism explains spatial organization in cross-feeding biofilms

Environment

Microbial interaction

 

Substrate conversion

x (resource usage)

Biomass retention

m

Substrate consumption-specific biomass retention

\(\frac{1}{{q}_{S}}=\frac{{\rm{biomass}}\,{\rm{retained}}}{{\rm{substrate}}\,{\rm{consumed}}/{\rm{time}}}\)

Unstructured (chemostat, Ch)

Independent (ind)

 

\({x}_{1}^{{Ch},{ind}}={x}_{2}^{{Ch},{ind}}\)

\({m}_{1}^{{Ch},{ind}}={m}_{2}^{{Ch},{ind}}\)

\({\left[\frac{1}{{q}_{S}}\right]}_{X1}^{{Ch},{ind}}={\left[\frac{1}{{q}_{S}}\right]}_{X2}^{{Ch},{ind}}\)

Cross-feeding (cross)

 

\({x}_{2}^{{Ch},{cross}} > \,{x}_{1}^{{Ch},{cross}}\)

\({m}_{2}^{{Ch},{cross}} > \,{m}_{1}^{{Ch},{cross}}\)

\({\left[\frac{1}{{q}_{S}}\right]}_{X1}^{{Ch},{cross}}={\left[\frac{1}{{q}_{S}}\right]}_{X2}^{{Ch},{cross}}\)

Structured (biofilm, Bf)

Independent (ind)

 

\({x}_{1}^{{Bf},{ind}}={x}_{2}^{{Bf},{ind}}\)

\({m}_{1}^{{Bf},{ind}}={m}_{2}^{{Bf},{ind}}\)

\({\left[\frac{1}{{q}_{S}}\right]}_{X1}^{{Bf},{ind}}={\left[\frac{1}{{q}_{S}}\right]}_{X2}^{{Bf},{ind}}\)

Cross-feeding (cross)

Primary degrader (X1)

\({x}_{1}^{{Bf},{cross}} < \,{x}_{1}^{{Bf},{ind}}\)

\({m}_{1}^{{Bf},{cross}} < \,{m}_{1}^{{Bf},{ind}}\)

\({\left[\frac{1}{{q}_{S}}\right]}_{X1}^{{Bf},{cross}} < {\left[\frac{1}{{q}_{S}}\right]}_{X1}^{{Bf},{ind}}\)

Secondary degrader (X2)

\({x}_{2}^{{Bf},{cross}}\gg \,{x}_{2}^{{Bf},{ind}}\)

\({m}_{2}^{{Bf},{cross}}\gg \,{m}_{2}^{{Bf},{ind}}\)

\({\left[\frac{1}{{q}_{S}}\right]}_{X2}^{{Bf},{cross}}\gg {\left[\frac{1}{{q}_{S}}\right]}_{X2}^{{Bf},{ind}}\)

  1. Substrate conversion degree (resource utilization) x, biomass retention m and substrate consumption-specific biomass retention 1/qS are defined in Supplementary Information (section Performance indicators). The analysis considers all kinetic parameters for degradation of substrate S1 by biomass X1 are the same with those for degradation of S2 by X2. Superscripts are Ch for chemostat, Bf for biofilm, ind for independent feeding, and cross for cross-feeding; Subscripts refer to biomass/substrate 1 or 2.