Fig. 5: Bacterial microcompartments are correlated with genes involved in flagellar assembly. | npj Biofilms and Microbiomes

Fig. 5: Bacterial microcompartments are correlated with genes involved in flagellar assembly.

From: Human gut microbiome gene co-expression network reveals a loss in taxonomic and functional diversity in Parkinson’s disease

Fig. 5

A Bar plots highlighting the number of positive correlations before and after FDR correction for normalized expression and MT TPM when taking all taxa expressing the BMCs genes and FA genes (upper panel) and relevant taxa from Fig. 4 (lower panel). All tests are based on the Spearman correlation. Correlation plots including selected taxa, both for normalized expression (B) and MT TPM (C), considering only hub genes from the 10% per modules approach. Tests are based on the Spearman correlation and all correlations are significant after FDR correction (q < 0.05). D Dot plot representing the sum of normalised expression per sample for a given process. BMC, FA and Chemotaxis gene grouping comprise all genes detected in the dataset, while ABC transporters only include the following genes: togBMNA, lacDEFGAICR, man, gguAB, ganAQ, msmEFGX, and wzm. Genera represented here are the “selected taxa” presented in (A, B).

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