Table 1 Results of growth simulations of single (S) and co-culture (C) of candidate GABA-producers using metabolic reconstructions

From: A rationally designed microbial consortium modulates neurodegeneration in a Drosophila melanogaster model of Parkinson’s disease

Consortium

Composition

Medium

Growth rate (h−1)

GABA (mmol gDW−1h−1)

Butyrate (mmol gDW−1h−1)

S1

LSYM

INU

0.06

0

0

S2

LSYM

GLC

0.30

0

0

S3

CEUT

INU

0.00

0

0

S4

CEUT

GLC

0.21

0

3.32

S5

PDOR

INU

0.20

0

0

S6

PDOR

GLC

0.56

0

0

S7

BTHE

INU

0.82

0.82

0

S8

BTHE

GLC

0.82

0.82

0

S9

LBRE

INU

0.16

0

0

S10

LBRE

GLC

0.78

0

0

S11

LPLA

INU

0.00

0

0

S12

LPLA

GLC

0.34

0

0

S13

BADO

INU

0.25

1.21

0

S14

BADO

GLC

0.55

0.35

0

S15

LPAR

INU

0.11

0

0

S16

LPAR

GLC

0.34

0

0

S17

PVUL

INU

0.28

0

0

S18

PVUL

GLC

0.79

0

0

C1a

BADO-BTHE

INU

0.33

0.66

0

C2a

BADO-BTHE-PVUL

INU

0.37

1.34

0

C1b

LPLA-CEUT

GLC

0.28

0.73

1.54

C2b

LBRE-CEUT

GLC

0.25

1.49

3.06

C3b

LPLA-CEUT-BADO

GLC

0.30

1.37

1.47

C4b

LBRE-CEUT-BADO

GLC

0.29

1.48

2.93

C5b

LPLA-LBRE-CEUT

GLC

0.30

1.37

0.74

C6b

LPLA-BTHE-BADO-CEUT

GLC

0.31

1.36

2.63

C7b

LPLA-BADO-CEUT

GLC

0.30

1.35

1.96

C8b

LPLA-LBR-CEUT-BADO

GLC

0.29

1.45

1.96

C9b

LBRE-BTH-CEUT-BADO

GLC

0.28

1.48

4.39

C10b

LBR-BDOR-CEUT-BADO

GLC

0.29

1.63

2.47

C11b

BADO-CEUT

INU

1.23

0.87

0.05

C12b

LPLA-CEUT-BADO-LBRE-BTH

GLC

0.30

1.35

1.98

C13b

LPLA-CEUT-BTH-BADO-LBRE

GLC

0.29

1.43

2.29

C14b

LPLA-CEUT

GLC

0.30

1.36

2.63

C1c

LBRE-LPAR

GLC

0.31

0.66

0

C2c

LPLA-LPAR

INU

0.43

1.22

0

C3c

BADO-LPAR

INU

0.55

1.21

0

C4c

BTHE-LPAR

GLC

0.31

0.66

0

C5c

BADO-BTHE-LPAR

INU

1.22

0.78

0

C6c

PVUL-LPAR

GLC-INU

0

0

0

C7c

LBRE-BTHE

GLC-INU

0

0

0

C8c

LBRE-BTHE-LPAR

INU

1.14

0

0

C9c

LSYM-BADO-LPAR

INU

1.16

0

5.77

C10c

LPLA-LSYM-BADO

INU

1.22

0

1.19

C11c

PDOR-LSYM-BADO

INU

1.23

0.38

0.73

C12c

PDOR-LSYM-BADO-LPAR

INU

0

0

0

C13c

LBRE-LPAR-BTHE-LSYM

INU

0

0

0

  1. Three rounds of simulations are shown (a, b, c). Models and abbreviations used are indicated in Supplementary Table 1, and inulin (INU) or glucose (GLC) were used in silico.