Table 3 Number of inter/ intra-chromosomal fusions by chromosome

From: Prognostic value of structural variants in early breast cancer patients

Chromosome

All fusions

Known fusions

 

Inter-chromosomal

Intra-chromosomal

Inter-chromosomal

Intra-chromosomal

chr1

135 (26.3%)

378 (73.7%)

1 (1.3%)

76 (98.7%)

chr2

85 (33.3%)

170 (66.7%)

1 (2.7%)

36 (97.3%)

chr3

86 (31.6%)

186 (68.4%)

0 (0%)

56 (100%)

chr4

65 (40.4%)

96 (59.6%)

0 (0%)

18 (100%)

chr5

90 (51.7%)

84 (48.3%)

0 (0%)

18 (100%)

chr6

94 (35.9%)

168 (64.1%)

0 (0%)

34 (100%)

chr7

77 (38.3%)

124 (61.7%)

0 (0%)

42 (100%)

chr8

100 (35.7%)

180 (64.3%)

0 (0%)

58 (100%)

chr9

67 (43.2%)

88 (56.8%)

0 (0%)

22 (100%)

chr10

77 (41.6%)

108 (58.4%)

1 (4.3%)

22 (95.7%)

chr11

70 (24.5%)

216 (75.5%)

0 (0%)

48 (100%)

chr12

86 (44.8%)

106 (55.2%)

0 (0%)

40 (100%)

chr13

40 (44.4%)

50 (55.6%)

0 (0%)

12 (100%)

chr14

34 (36.2%)

60 (63.8%)

0 (0%)

24 (100%)

chr15

56 (39.4%)

86 (60.6%)

0 (0%)

24 (100%)

chr16

58 (29.6%)

138 (70.4%)

0 (0%)

26 (100%)

chr17

154 (23.3%)

508 (76.7%)

1 (1.3%)

78 (98.7%)

chr18

32 (47.1%)

36 (52.9%)

1 (20%)

4 (80%)

chr19

63 (26.4%)

176 (73.6%)

1 (4%)

24 (96%)

chr20

70 (39.8%)

106 (60.2%)

0 (0%)

30 (100%)

chr21

38 (47.5%)

42 (52.5%)

0 (0%)

6 (100%)

chr22

42 (35.6%)

76 (64.4%)

0 (0%)

20 (100%)

chrX

43 (55.8%)

34 (44.2%)

0 (0%)

6 (100%)

chrY

0 (100%)

0 (0%)

0 (100%)

0 (0%)

  1. Number of fusions located in each chromosome (percentage of inter/intra-chromosomal fusions located in each chromosome). Each fusion was counted twice based on chromosomal location of gene1 and gene2.