Table 1 Concordance of variants reported clinically in diagnostic WGS of 25 blood samples and WGS from 63 manufactured DBS.
From: Scalable, high quality, whole genome sequencing from archived, newborn, dried blood spots
Subject ID | Relationship to proband | Variants previously reported following diagnostic WGS | Variant classification | FTA DBS WGS | PC DBS WGS | Dx confirmeda |
---|---|---|---|---|---|---|
1 | Proband | FOXP3, c.1010G>A, p.Arg337Gln | P | 2 | 3 | Y |
2 | Proband | None | None | 1 | 2 | |
3 | Proband | Chr22:23961084-24401339del | P | 1 | 2 | Y |
4 | Father | None | None | 2 | 2 | |
5 | Sibling | FLNA, c.2410G>A, p.Val804Ile | VUS | 1 | 2 | Y |
6 | Proband | FLNA, c.2410G>A p.Val804Ile; Chr2:112658998-112854380dup | VUS | 1 | 2 | Y |
7 | Proband | DCLRE1C, c.406G>A, p.Asp136Asn; Chr10:14983601-15065700del | LP, P | 1 | 2 | Y |
8 | Proband | RYR2, c.12290A>G, p.Asn4097Ser; ANK2,c.8404G>C, p.Asp2802His | VUS | 1 | 1 | Y |
9 | Father | RYR2, c.12290A>G, p.Asn4097Ser; ANK2,c.8404G>C, p.Asp2802His | VUS | 1 | 1 | Y |
10 | Proband | SMN1 Chr5:70247540-70247820x0 del; SMN2 Chr5:69372123-69372400dup | P | 2 | 3 | Y |
11 | Proband | TUBB3, c.1228G>A, p.Glu410Lys; Chr22:18873501-21466000del | P | 3 | 3 | Y |
12 | Proband | ROBO1, c.107G>T, p.Arg36Met; ROBO1, c.4610G>A, p.Gly1537Glu | VUS | 1 | 2 | Y |
13 | Proband | PROKR2, c.563C>T, p.Ser188Leu; Chr14:59001701-61049600dup | VUS | 2 | 2 | Y |
14 | Proband | HSD17B4, c.1619A>G, p.His540Arg | VUS | 1 | 2 | Y |
15 | Proband | None | None | 1 | 1 | |
16 | Proband | None | None | 1 | ||
17 | Proband | None | None | 1 | ||
18 | Proband | EPG5, c.2066del, p.Leu689Ter | P | 1 | 1 | Y |
19 | Proband | EPG5, c.2066del, p.Leu689Ter | P | 1 | 1 | Y |
20 | Proband | None | None | 1 | ||
21 | Proband | Chr15:23512201-28700800del | P | 1 | Y | |
22 | Proband | Chr10:81634801-89151100 del | P | 1 | Y | |
23 | Proband | Chr2:21240919-21244369del | P | 1 | Y | |
24 | Proband | ChrX:1422154-1423912del | P | 1 | Y | |
25 | Proband | SMN1 Chr5:70247540-70247820x0del; SMN2 Chr5:69372122-69372400x2 dup | P | 1 | Y |