Table 4 Description of parameters and constraints used in the models and their respective source whenever available

From: Mathematical modeling of diurnal patterns of carbon allocation to shoot and root in Arabidopsis thaliana

Name

Symbol

Constraints/range

Reference/note

SPS KM

KM5

0.1– 2

25, 52, 53 ,

   

Spinacia oleracea

   

Pisum sativum

Inv KM

KM6

7–13

54

   

Arabidopsis thaliana Oy-0

Hxk KM for GlcK activity

KM7

1.1–0.2

55, 56

  

(0.01–2 for gin2-1)

Helianthus annuus, various

Hxk KM for FrcK activity

KM8

0.1–3 (0.1–5 for gin2-1)

55, 56

   

Helianthus annuus, various

Inv Ki for Frc inhibition

Ki6a

0.001–10

57

   

Lolium temulentum

Inv Ki for Glc inhibition

Ki6b

0.001–10

Assumed and optimized

Hxk Ki for Frc inhibition

Ki7

0.01–10

Assumed and optimized

Hxk Ki for Glc inhibition

Ki8

0.001–10

Assumed and optimized

SPS maximal reaction rate

Vm5

10–20 for both

Measured

Inv maximal reaction rate

Vm6

60–100 for Ler

Measured

  

70–120 for gin2-1

 

GlcK maximal reaction rate

Vm7

2–4 for Ler

Measured

  

0–1 for gin2-1

 

FrcK maximal reaction rate

Vm8

5–10 for Ler

Measured

  

2–5 for gin2-1

 

Photosynthesis rate

r1

 

Measured and splined

respiration rate

r2

−28.6 for Ler N

Measured

  

−37.5 for gin2-1 N

 
  

−44.0 for Ler HL

 
  

−47.5 for gin2-1 HL

 

Rate of starch synthesis

r3

1–7.5 for N

Measured and splined

  

5–26 for HL

 

Rate of starch degradation

r4

−4 to −10 for N

Measured and splined

  

−6 to −20 for HL

 

SPS activity as MM

r5

(Vm5∙HP)/(km5 + HP)

Measured and splined

Inv activity as MM

r6

(Vm6∙Suc)/((km6∙(1 + Frc/Ki6a) + Suc)∙(1 + Glc/Ki6b))

Measured and splined24,47,49

GlcK activity as MM

r7

(Vm7 ∙Glc)/(km7 ∙(1 + Frc/Ki7) + Glc)

Measured and splined49

FrcK activity as MM

r8

(Vm8 ∙Frc)/(km8∙ (1 + Glc/Ki8) + Frc)

Measured and splined49

Aa synthesis from Cit as MBE

r9

r_ca ∙Cit

Assumed and optimized

  

r_ca {0.01,100}

 

SC formation from Aa as MBE

r10

a_ba∙Aa

Assumed and optimized

  

a_ba {0,1}

 

SC formation from HP as MBE

r11

ab_hp∙HP

Assumed and optimized

  

ab_hp {0.0001,100}

 

Exp rate from Aa as MBE

r12

aa_e∙Aa

Assumed and optimized

  

aa_e {0.0001,10}

 

Exp rate from Suc as MBE

r13

a_e∙Suc

Assumed and optimized

  

a_e {0.0001,10}

 

Cit formation from HP as MBE

r14

hp_c∙HP

Assumed and optimized

  

hp_c {0.01,10}

 

MF formation from HP as MBE

r15

hp_mf∙HP

Assumed and optimized

  

hp_mf {0.01,10}

 

MF formation from Cit as MBE

r16

cit_mf∙Cit

Assumed and optimized

  

cit_mf {0.01,10}

 

Cit formation from MF as MBE

r17

mf_cit∙MF

Assumed and optimized

  

mf_cit {0.01,10}

 
  1. SPS sucrose-phosphate-synthase, Inv invertase, Hxk hexokinase, GlcK glucokinase, FrcK fructokinase, Frc fructose, Glc glucose, HP hexose phosphate, Exp export, SC structural carbon, Suc sucrose, Cit citrate, MF malate/fumarate, Aa amino acids, MM Michaelis–Menten kinetic, MBE mass balance equation. KM are given in mM and Vm in µmol h−1 gFW−1