Fig. 5: Model comparison based on Jaccard distance between reaction sets.
From: Curating and comparing 114 strain-specific genome-scale metabolic models of Staphylococcus aureus
The models were divided into three groups based on their metabolite and reaction identifiers: (a) has all models of the Path2Models project with consistently mixed identifiers, (b) has all models with KEGG identifiers (hence, all GEMs by Lee et al.), and (c) contains all models with BiGG identifiers. Within the three groups, all pairwise Jaccard distances were calculated based on the models’ reaction sets. The distances are displayed in the heat map. The color bar range is equal for (a) and (c) for better comparison. As the distances in (b) are much smaller, the color bar’s range was adapted.
