Table 2 Feature-based decision guidance.

From: Curating and comparing 114 strain-specific genome-scale metabolic models of Staphylococcus aureus

Feature

iSB619

iMH551

Lee

Path2Models

Bosi

Magnúsdóttir

iYS854

Database

   

   

Simulatable models

  

BiGG IDs

   

 

Kyoto Encyclopedia of Genes and Genomes (KEGG) IDs

  

    

Growth on different media

 

  

 

High MEMOTE score

 

 

 

Predictive value score

3

5

0

0

3–5

2

7

  1. The main features of the S. aureus GEMs are listed and indicated with the symbol when present. The models are assigned to the features based on their strengths after the model improvement steps. A predictive value score was calculated as described in the section “Decision guidance”. With the help of the features and the predictive value score, one can identify the best suited model for the research question of interest.