Fig. 3: Detailed and simplified visualizations of all reactions and compounds that compose the integrated chemosynthesis network.
From: The modular biochemical reaction network structure of cellular translation
a Full map with Translation (T) reactions in orange, Polymer Biosynthesis (B) reactions in green, and Metabolic (M) reactions in blue. Compounds (in white) are scaled in size according to their number of connections within the network. Network depicted with Gephi version 0.9.2 using a ForceAtlas2 algorithm29 (settings: scaling = 5.0, gravity = 1.0, tolerance = 1.0, approximation = 1.2). b A simplified depiction of the number of compounds that connect reactions between (directed arrows) and within (circular arrows) each of the layers.
