Table 2 Number (percentage) of SARS-CoV-2 lineages in neural network model training and test sets

Single mutation

2717 (44.6%)

0 (0%)

2717 (38.4%)

BA.2

469 (7.7%)

534 (54.5%)

1003 (14.2%)

B.1.351

559 (9.2%)

2 (0.2%)

561 (7.9%)

Omicron: Other

407 (6.7%)

41 (4.2%)

448 (6.3%)

BA.4/5

178 (2.9%)

241 (24.6%)

419 (5.9%)

B.1.1.7

380 (6.2%)

0 (0%)

380 (5.4%)

B.1.617.2

316 (5.2%)

2 (0.2%)

318 (4.5%)

BA.1

299 (4.9%)

0 (0%)

299 (4.2%)

P.1

216 (3.5%)

0 (0%)

216 (3.1%)

B.1.617.1

92 (1.5%)

0 (0%)

92 (1.3%)

B.1427/429

88 (1.4%)

0 (0%)

88 (1.2%)

B.1.526

64 (1.1%)

0 (0%)

64 (0.9%)

BQ.1.1

8 (0.1%)

54 (5.5%)

62 (0.9%)

BQ.1

8 (0.1%)

23 (2.3%)

31 (0.4%)

B.1.429

30 (0.5%)

0 (0%)

30 (0.4%)

XBB

4 (0.1%)

25 (2.6%)

29 (0.4%)

C.37

27 (0.4%)

0 (0%)

27 (0.4%)

B.1.621

27 (0.4%)

0 (0%)

27 (0.4%)

B.1.525

25 (0.4%)

0 (0%)

25 (0.4%)

BN.1

6 (0.1%)

17 (1.7%)

23 (0.3%)

CH.1.1

0 (0%)

17 (1.7%)

17 (0.2%)

B.1.1.519

16 (0.3%)

0 (0%)

16 (0.2%)

B.1.616

14 (0.2%)

0 (0%)

14 (0.2%)

AY

14 (0.2%)

0 (0%)

14 (0.2%)

XBF

0 (0%)

12 (1.2%)

12 (0.2%)

CJ.1.1

0 (0%)

12 (1.2%)

12 (0.2%)

P.2

11 (0.2%)

0 (0%)

11 (0.2%)

B.1.2

9 (0.1%)

0 (0%)

9 (0.1%)

B.1.1.298

9 (0.1%)

0 (0%)

9 (0.1%)

C.1.2

8 (0.1%)

0 (0%)

8 (0.1%)

A.VOI.V2

7 (0.1%)

0 (0%)

7 (0.1%)

R.1

6 (0.1%)

0 (0%)

6 (0.1%)

A.23.1

6 (0.1%)

0 (0%)

6 (0.1%)

A.27

6 (0.1%)

0 (0%)

6 (0.1%)

B.1.1.33, B.1.1.1

6 (0.1%)

0 (0%)

6 (0.1%)

B

6 (0.1%)

0 (0%)

6 (0.1%)

B.1.214.2

6 (0.1%)

0 (0%)

6 (0.1%)

A.23

5 (0.1%)

0 (0%)

5 (0.1%)

B.1.177.31

5 (0.1%)

0 (0%)

5 (0.1%)

B.1.388

4 (0.1%)

0 (0%)

4 (0.1%)

B.1.258

4 (0.1%)

0 (0%)

4 (0.1%)

AV.1

4 (0.1%)

0 (0%)

4 (0.1%)

R.2

4 (0.1%)

0 (0%)

4 (0.1%)

Multiple mutations

4 (0.1%)

0 (0%)

4 (0.1%)

B.1.523

3 (0.0%)

0 (0%)

3 (0.0%)

B.1.619.1

3 (0.0%)

0 (0%)

3 (0.0%)

B.1.617

3 (0.0%)

0 (0%)

3 (0.0%)

B.1.625

3 (0.0%)

0 (0%)

3 (0.0%)

C.36

2 (0.0%)

0 (0%)

2 (0.0%)

B.1.619

1 (0.0%)

0 (0%)

1 (0.0%)