Table 3 Added edges in the GA-refined models compared to the 2017 model29

From: Automated model refinement using perturbation-observation pairs

 

PA ⊣ ABI2

Aquaporin → ROS

ROS → AR

PA → MD

pHc → VA

Other Edges

Maheshwari 2019

O

X

X

X

X

 

GA 1-A

O

O

O

O

O

PA ⊣ HAB1

GA 1-B

O

O

O

O

O

Ca2+c osc ⊣ ABI2

AR → RBOH

  1. AR Actin reorganization, MD Microtubule depolymerization, VA Vacuolar acidification.
  2. The notation “→” means activation and “⊣” means inhibition. Note that the inhibitory edge from PA to ABI2, which was incorporated in the 2019 revision of that model by Maheshwari et al.30, was added by both GA-refined models.
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