Extended Data Fig. 1: Comparison of running time. | Nature Biomedical Engineering

Extended Data Fig. 1: Comparison of running time.

From: Ultrafast prediction of somatic structural variations by filtering out reads matched to pan-genome k-mer sets

Extended Data Fig. 1

a, Wall-clock times of ETCHING and other tools from FASTQ input files to SV predictions on benchmarking BRCA samples. These include the mapping procedures of the FASTQ files from tumour and normal samples. We measured the running times using 30 threads on DELL PowerEdge R830 servers. b and c, The comparisons of the running times of ETCHING (from FASTQ) and other tools (from pre-mapped BAM) to SV predictions in CPU time on a single thread (b) and wall-clock time on 30 threads (c).

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