Extended Data Fig. 5: Spatially resolved perturbation mapping. | Nature Biomedical Engineering

Extended Data Fig. 5: Spatially resolved perturbation mapping.

From: Integrated in vivo combinatorial functional genomics and spatial transcriptomics of tumours to decode genotype-to-phenotype relationships

Extended Data Fig. 5

Spatially resolved visualization of the inferred probabilities indicating the presence or absence of each of the 8 perturbations associated with annotated tumour nodules for all 11 samples used in this study from a single RUBIX experiment with two animals (Methods), as in Fig. 3d. Perturbation probabilities for all samples can be explored through the interactive web browser (https://chocolat-g2p.dkfz.de/).

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