Extended Data Fig. 7: Expression of Eomes or Brachyury downstream targets Mesp1, Msgn1, Mixl1, Foxa2 and Six2 in dKO cells activates specific ME gene programs.

a, Expression levels of Mesp1, Msgn1, Mixl1 and Foxa2 in WT, dKO and dKO cells induced with Eomes- or Brachyury- FL, VP16 and EnR rescue constructs. Expression levels are shown as log10 RPKM from n=3 biologically independent RNA-seq experiments. b-f, Expression levels of ME genes after induced expression of Mesp1 (b), Msgn1 (c), Mixl1 (d), Foxa2 (e) or Six2 (f) in dKO cells. Bars represent centred scaled counts from n=3 biologically independent RNA-seq experiments. Error bars indicate s.e.m.