Fig. 2: Genome-wide fixation index and pooled heterozygosity analyses across the fox genome.
From: Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours
a–f, Dots on all panels represent windows of 500 kb analysed in both the FST and Hp analyses. The order of the windows is based on LASTZ mapping of individual windows to the dog genome and a previously published fox–dog synteny map31 (chimeric scaffolds are split to reflect the most likely location of each window in the fox genome). Vertical lines separate fox chromosomes. Chromosome numbers are indicated in b. a,c,e, FST analysis across the fox genome. The horizontal line is FST = 0.458. b,e,f, Hp analysis across the fox genome. The grey patterned box and coloured dots indicate the windows that reached significance in that population (Supplementary Table 6; Supplementary Fig. 11). The dots that are outlined in the non-significant zones are windows that reached significance in a different population. a, FST between the tame and conventional populations. b, Hp in the tame population. c, FST between tame and aggressive populations. d, Hp in the aggressive population. e, FST between aggressive and conventional populations. f, Hp in the conventional population.
