Table 1 Major SorCS1 haplotypes

Haplotype	Frequency in tame	Frequency in aggressive	Number of homozygotes in F₂	Mean D.PC1 in F₂	Variance D.PC1 in F₂
*SorCS1* region
trq	7%	47%	15	−0.29	0.64
lav	2%	37%	40	−0.55	1.06
olv	61%	0%	50	0.07	0.95
pch	16%	10%	7	−0.53	1.23
Left of *SorCS1*
re	19%	33%	35	−0.14	1.17
gr	20%	31%	37	−0.03	0.95
yl	40%	0%	26	−0.39	1.14
Right of *SorCS1*
p	17%	29%	61	−0.50	1.14
s	51%	10%	17	−0.09	0.77

The major haplotypes that were found in each of the three regions within the genotyped 5_-Mb interval surrounding SorSC1 (left of SorCS1, at SorCS1 (middle) and right of SorCS1). Only haplotypes that reached 10% frequency in at least one of the two populations are shown. The haplotype names in column one are the same names listed in Supplementary Table 20, which contains extended information about the haplotypes found. The frequencies in the tame and aggressive populations are based on the data from Haploview. The number of homozygotes in the F₂ population is listed, along with the mean value and variance for D.PC1 in the homozygous individuals. The cumulative distribution of D.PC1 values in F₂ homozygotes for the haplotypes in the three regions is shown in Supplementary Fig. 10.

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