Extended Data Fig. 6: Diagnostic plots for the phylogenetically controlled mixed-effect model on the relationship between species-level RR and predictor variables, run on one randomly drawn phylogenetic tree.
From: Ecological filtering shapes the impacts of agricultural deforestation on biodiversity
Plots for all variables other than generation length were from a model that dropped generation length, while the plot for generation length was from a model that dropped body mass. Pairs of plots on the trace (left) and density (right) of posterior estimates are displayed for each fixed factor and random factor including residual variance, or ‘Units’ (in dashed box).
