Fig. 3: Detection and expression of PULs across known and previously undescribed Bacteroidales members.
From: Interspecies cross-feeding orchestrates carbon degradation in the rumen ecosystem
a, Maximum likelihood phylogenetic tree of 16 concatenated ribosomal proteins from all 32 Bacteroidetes MAGs recovered here. These genomes span at least ten families within the Bacteroidales order. Lines connecting the tree to the genome name are coloured by taxonomic family assignment. Circles represent nodes with bootstrap support greater than 70, out of 100 bootstraps. Tree scale defines branch length. The full tree in Newick format is provided in Supplementary Dataset 13. b, The number of PULs encoded (grey) and expressed (coloured) from genomes. c, Expressed PULs organized by substrate. The coloured boxes indicate that at least one gene within the PUL was detected in proteomics, with two or more unique peptides. Full descriptions of PULs and detected proteins are given in Supplementary Dataset 1, Supplementary Table 5. MLGs, mixed-linked glucans.
