Extended Data Fig. 3: Host gene expression comparisons between samples with and without hybrid selection.
From: Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice
Total RNA-Seq reads were mapped to mm10 mouse genome using STAR, and the mapped reads were converted into read counts for each gene by HTSeq. After excluding genes with < 10 reads mapping across any sample, the read counts for each sample were normalized by TPM (Transcripts Per Million). Each dot represents a single gene. The average TPM for each gene is shown from non-hybrid selected libraries (x-axis) and hybrid selected libraries (y-axis) (n = 3 animals, Pearson’s r).
