Table 1 General features of the manually curated phage genomes
From: Large freshwater phages with the potential to augment aerobic methane oxidation
Sampling site | Sampling year | Genome name (short name) | Length (bp) | GC content (%) | No. of ORFs | No. of tRNAs | Complete or partial | pmoC taxonomy |
|---|---|---|---|---|---|---|---|---|
BML (Canada) | 2015–2017 | BML_pmoC-phage_2 (BML_2) | 218,687 | 33 | 342 | 15 | Partial | Gamma- |
BML_pmoC-phage_3 (BML_3)b | 190,971 | 34 | 272 | 20 | Partial | Gamma- c,d | ||
BML_pmoC-phage_4 (BML_4) | 243,619 | 34 | 342 | 18 | Complete | Gamma-c | ||
BML_S (Canada) | 2017 | BML_S_phage_1 (BML_S_1) | 167,437 | 40 | 212 | 24 | Complete | – |
TP6 (Canada) | 2012 | TP6_pmoC-phage_1 (TP6_1) | 308,538 | 37 | 406 | 29 | Partial | Gamma-c |
PDSYNTPWS (Canada) | 2012 | PDSYNTPWS_phage_1 (PDSYNTPWS_1)b | 222,435 | 34 | 358 | 20 | Partial | – |
Lake Mendota (Madison, WI, United States) | 2008–2012 | Lake_Mendota_pmoC-phage_1 (LM_1) | 174,291 | 41 | 249 | 21 | Complete | Alpha- |
Lake_Mendota_pmoC-phage_2 (LM_2) | 174,276 | 39 | 263 | 24 | Complete | Alpha- | ||
Lake_Mendota_pmoC-phage_3 (LM_3) | 172,382 | 41 | 249 | 21 | Complete | Alpha- | ||
Lake_Mendota_pmoC-phage_4 (LM_4) | 353,177 | 32 | 465 | 14 | Complete | Gamma- | ||
Lake_Mendota_pmoC-phage_5 (LM_5) | 166,198 | 38 | 245 | 19 | Complete | Alpha- | ||
Lake_Mendota_pmoC-phage_6 (LM_6)b | 198,907 | 34 | 313 | 20 | Partial | Gamma- | ||
Lake_Mendota_phage_7 (LM_7) | 166,826 | 39 | 238 | 25 | Complete | – | ||
Lake_Mendota_pmoC-phage_8 (LM_8) | 167,952 | 39 | 252 | 25 | Complete | Alpha-e | ||
Lake_Mendota_phage_9 (LM_9) | 172,107 | 40 | 240 | 22 | Complete | – | ||
Crystal Bog (Madison, WI, United States) | 2007–2009 | Crystal_Bog_pmoC-phage_1 (CB_1) | 352,383 | 35 | 445 | 23 | Complete | Alpha- |
Crystal_Bog_pmoC-phage_2 (CB_2) | 527,138 | 38 | 594 | 13 | Complete | Alpha- | ||
Crystal_Bog_pmoC-phage_3 (CB_3) | 166,456 | 35 | 247 | 18 | Complete | Gamma- | ||
Crystal_Bog_pmoC-phage_4 (CB_4) | 165,508 | 38 | 264 | 4 | Complete | Alpha- | ||
Crystal_Bog_pmoC-phage_5 (CB_5) | 166,149 | 44 | 248 | 4 | Complete | Alpha-d | ||
Crystal_Bog_phage_6 (CB_6) | 174,375 | 38 | 233 | 0 | Complete | – | ||
Lake Rotsee (Switzerland) | 2017–2018 | Lake_Rotsee_pmoC-phage_1 (LR_1) | 168,581 | 40 | 224 | 4 | Complete | Alpha- |
Lake_Rotsee_pmoC-phage_1 (LR_2) | 160,734 | 37 | 241 | 6 | Complete | Alpha- | ||
Lake_Rotsee_pmoC-phage_1 (LR_3) | 159,173 | 35 | 248 | 10 | Complete | Gamma- | ||
Lake_Rotsee_pmoC-phage_1 (LR_4) | 365,676 | 36 | 467 | 4 | Complete | Gamma- | ||
Lake_Rotsee_pmoC-phage_1 (LR_5) | 341,475 | 36 | 463 | 15 | Complete | Gamma- | ||
Lake_Rotsee_pmoC-phage_1 (LR_6) | 314,403 | 38 | 442 | 0 | Complete | Gamma-c |
