Extended Data Fig. 7: Evaluation of associations between the lower airway antibiotic resistance genes and clinical outcome.

Bubble plot showing DESeq results of summarized categories of antibiotic resistant microbial genes taken from MEGARes for the metagenome (top) and metatranscriptome (bottom) data sets for each clinical outcome comparison (bubble size based on median relative abundance for those found to be statistically significant). Colored bubbles indicate significantly enriched antibiotic resistance groups.