Extended Data Fig. 3: Proportion of SARS-CoV-2 genomes carrying mutations associated with antibody resistance and/or increased infectivity in cases from UCSF hospitals and clinics.

Pie charts showing the proportions of SARS-CoV-2 genomes carrying identifiable mutations associated with antibody resistance (L452R/Q, E484K/Q, and/or F490S) and increased infectivity (N501Y/T, L452R/Q, and/or F490S) in fully vaccinated (left), unvaccinated (middle), and partially vaccinated (right) cases. The pie charts are shaded according to genomes carrying ≥1 mutation associated with antibody resistance (red), ≥1 mutation associated with increased infectivity (green), or neither type of mutation (black). Fisher’s Exact test (two-tailed) was used to calculate p-values. Abbreviations: NS, non-significant; *, p < 0.05; **, p < 0.01.