Extended Data Fig. 9: Distribution of Cnl1 among Bt65 x H99 crg1Δ F1 progeny and parental strains.
The Cnl1 non-LTR elements identified in the Nanopore-based whole-genome assemblies are depicted for H99, Bt65, three hypermutator F1 progeny (P02, P08, and P34, all on the left), and three non-hypermutator F1 progeny (P14, P18, and P20, all on the right). Blue and orange bars under the subtelomeric region of each chromosome indicate which parental strain the region was inherited from (orange for Bt65, blue for H99 crg1Δ). Red asterisks indicate invasion of Cnl1 into an H99 crg1Δ subtelomeric region that previously had zero Cnl1 copies/fragments. Accurate assembly of telomeric repeat sequences at the end of each chromosome is indicated by a black half circle. Cnl1 length is also indicated by the shade of black for each element.
