Extended Data Fig. 6: Whole genome single-nucleotide polymorphisms analysis of ST418 E. hormaechei isolates. | Nature Microbiology

Extended Data Fig. 6: Whole genome single-nucleotide polymorphisms analysis of ST418 E. hormaechei isolates.

From: Antibiotic resistance genes in the gut microbiota of mothers and linked neonates with or without sepsis from low- and middle-income countries

Extended Data Fig. 6

SNP analysis of ST418 E. hormaechei (n = 16) collected during this study and Enterobacter hormaechei subsp. xiangfangensis GCF_1526085 using snippy v4.6.0 on paired end fastq, gubbins v2.3.4 to remove recombination and IQ-tree v2.0 to construct the phylogeny. iTOL v4 was used to visualise the phylogenetic tree. BCBR/BCMR, neonate (BR)/mother (MR) rectal isolates from Bangladesh, Chittagong Maa-O-Shishu Hospital, Chattogram (BC). BKBR/BKMR, neonate (BR)/mother (MR) rectal isolates from Bangladesh, Kumudini Women’s Medical College, Mirzapur (BK). Reference, BC-MR78-3. Dates of rectal swab collection are shown.

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