Fig. 3: Predicted physiology and environmental data.
From: Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Predicted physiology and environmental data for the highest-quality genome for each species group that has a near-complete (≥90%) genome. Bars to the right of taxon names and in background reflect classes (Fig. 1). Numbers in parentheses next to taxon names are unique genome identifiers as discussed in text. ‘Genome size’ indicates the observed size of each genome. ‘Cell size’ indicates evidence that the genome was sequenced from small cells (<0.5 μm, filled small circle) or large cells (>0.5 μm, filled large circle). ‘Acetogen/WLP’, Wood-Ljungdahl pathway and acetogenesis; ‘acs2’, acetyl-CoA synthetase; ‘acsABCDE’, CO dehydrogenase/acetyl-CoA synthase; ‘Respiration’, ‘e- acceptors’ and ‘H2ase’ (hydrogenase) indicate genes predicted to encode proteins involved in energy metabolism. ‘Lo-O2’, cytochrome c oxidase complex; ‘Hi-O2’, cytochrome bd ubiquinol; ‘M+’, metal-reducing cytochromes; ‘e- Pilin’, conductive pili. Symbiosis-related genes include ‘T4aP’ (type-4a pilus), ‘Tad’ (tight-adherence pilus), ‘sF-ATP (‘symbiotic’ type 2/3 FoF1 ATPase α-subunit), ‘Translocase’ (ATP/ADP translocase) and ‘big ORF’ (indicating the presence of a large ORF). ‘Temp’, ‘O2’ and ‘pH’ indicate the observed temperature, oxygen concentration (mM) and pH of the sample from which each genome was sequenced. Data for additional Omnitrophota genomes are summarized in Supplementary Fig. 10.
