Fig. 5: VEE lineages.
From: A framework for automated scalable designation of viral pathogen lineages from genomic data
Comparison of the serology subtype designation (left tree) with the automated lineage designation (right tree) of VEE, based on a tree previously generated by the Augur pipeline23 and visualized on FigTree v.1.4.4. According to the current nomenclature, VEE encompasses Everglades virus (EVEV), Mucambo virus (MUCV), Tonate virus (TONV), Pixuna virus (PIXV), Cabassou virus (CABV), Rio Negro virus (RNV), Mosso das Pedras virus (MDPV), Pirahy virus (PIRAV) and VEEV. The VEEV clade is labelled in the tree.
