Extended Data Fig. 5: Candidate gut microbiome species associated with Enterobacteriaceae colonization and abundance.
From: Ecological dynamics of Enterobacteriaceae in the human gut microbiome across global populations
a, Heatmap depicting all statistically significant microbiome species linked to Enterobacteriaceae, E. coli or K. pneumoniae colonization and/or abundance across the entire dataset or strictly among healthy adults. b, Number of species among the 1000 most prevalent detected that were classified as co-excluders, co-colonizers or not significant according to their order affiliation. c, Proportion of candidate species per taxon classified according to whether they were consistently associated to different taxa and/or across different datasets. d, Phylogenetic tree of representative genomes from all Faecalibacterium species detected in this study and their estimated association to Enterobacteriaceae, E. coli or K. pneumoniae. Species without a labeled effect size were not associated with any of the Enterobacteriaceae species tested.
