Extended Data Fig. 6: Co-excluders and co-colonizers of carbapenemase-producing Enterobacteriaceae.
From: Ecological dynamics of Enterobacteriaceae in the human gut microbiome across global populations
a, Number of species differentially abundant between individuals colonized by carbapenemase-producing Enterobacteriaceae (CPE) compared to household negative controls (left) and compared to CPE-negative index subjects that were decolonized within the previous year (right). Species are coloured based on whether they were also found to be significantly different, and in the same direction, using the whole Enterobacteriaceae family (green), missing (grey) or significant but in opposite directions (red). b, Bar height represents the effect size derived from MaAsLin2 of species that were associated with both Enterobacteriaceae and CPE status using household controls (left) or using CPE-negative index subjects (right). Positive effect size denotes co-colonizers, while co-excluders are shown with a negative effect size. Error bars represent the standard error.
