Extended Data Fig. 1: Biofilm image segmentation process. | Nature Physics

Extended Data Fig. 1: Biofilm image segmentation process.

From: Biofilms as self-shaping growing nematics

Extended Data Fig. 1

From top to bottom: Raw data, deconvolved data, binarized image, segmented image and reconstructed image. In the bottom two panels, each colour denotes a distinct cell. Slice 1 and slice 2 correspond to two different \((r,z)\) cuts of the same biofilm grown under a 2% gel overnight. Scale bar, 5 µm.

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