Abstract
Over the past two decades, the number of genetically defined autoinflammatory interferonopathies has steadily increased. Aicardi–Goutières syndrome and proteasome-associated autoinflammatory syndromes (PRAAS, also known as CANDLE) are caused by genetic defects that impair homeostatic intracellular nucleic acid and protein processing respectively. Research into these genetic defects revealed intracellular sensors that activate type I interferon production. In SAVI and COPA syndrome, genetic defects that cause chronic activation of the dinucleotide sensor stimulator of interferon genes (STING) share features of lung inflammation and fibrosis; and selected mutations that amplify interferon-α/β receptor signalling cause central nervous system manifestations resembling Aicardi–Goutières syndrome. Research into the monogenic causes of childhood-onset systemic lupus erythematosus (SLE) demonstrates the pathogenic role of autoantibodies to particle-bound extracellular nucleic acids that distinguishes monogenic SLE from the autoinflammatory interferonopathies. This Review introduces a classification for autoinflammatory interferonopathies and discusses the divergent and shared pathomechanisms of interferon production and signalling in these diseases. Early success with drugs that block type I interferon signalling, new insights into the roles of cytoplasmic DNA or RNA sensors, pathways in type I interferon production and organ-specific pathology of the autoinflammatory interferonopathies and monogenic SLE, reveal novel drug targets that could personalize treatment approaches.
Key points
-
Genetic defects impairing intracellular nucleic acid and protein processing and/or STING activation cause autoinflammatory interferonopathies, indicating that intracellular sensor-mediated type I interferon production exhibits disease-specific and disease-overlapping clinical features.
-
Identification of the genetic causes of monogenic systemic lupus erythematosus (SLE) reveals molecular mechanisms triggered by extranuclear nucleic that distinguish monogenic SLE from the autoinflammatory interferonopathies.
-
Monogenic inborn errors of immunity caused by NF-κB dysregulation, mitochondrial dysfunction or impaired DNA damage responses unravel sources of interferogenic nucleic acids that drive type I interferon production in the context of complex developmental and/or immune-dysregulation.
-
Treatments that block interferon signalling and interferon-stimulated genes continue to elucidate the role of type I interferon in driving systemic and organ-specific inflammation.
-
Novel drugs targeting cytoplasmic sensors in autoinflammatory interferonopathies and endosomal TLRs in paediatric-onset SLE provide new treatment opportunities for a broader spectrum of diseases with presumed interferon-mediated pathology.
-
Advances in modelling tissue and organ inflammation start to unravel the effect of disease-causing mutations on critical tissues. These insights herald a new era of precision medicine in rare monogenic diseases.
This is a preview of subscription content, access via your institution
Access options
Access Nature and 54 other Nature Portfolio journals
Get Nature+, our best-value online-access subscription
$32.99 / 30 days
cancel any time
Subscribe to this journal
Receive 12 print issues and online access
$189.00 per year
only $15.75 per issue
Buy this article
- Purchase on SpringerLink
- Instant access to full article PDF
Prices may be subject to local taxes which are calculated during checkout







Similar content being viewed by others
References
Isaacs, A. & Lindenmann, J. Virus interference. I. The interferon. Proc. R. Soc. Lond. B Biol. Sci. 147, 258–267 (1957).
Crow, Y. J. Type I interferonopathies: a novel set of inborn errors of immunity. Ann. N. Y. Acad. Sci. 1238, 91–98 (2011).
Crow, Y. J. et al. Mutations in the gene encoding the 3’-5’ DNA exonuclease TREX1 cause Aicardi-Goutieres syndrome at the AGS1 locus. Nat. Genet 38, 917–920 (2006).
Crow, Y. J. et al. Mutations in genes encoding ribonuclease H2 subunits cause Aicardi-Goutieres syndrome and mimic congenital viral brain infection. Nat. Genet. 38, 910–916 (2006).
Liu, Y. et al. Activated STING in a vascular and pulmonary syndrome. N. Engl. J. Med. 371, 507–518 (2014).
Jeremiah, N. et al. Inherited STING-activating mutation underlies a familial inflammatory syndrome with lupus-like manifestations. J. Clin. Invest. 124, 5516–5520 (2014).
Deng, Z. et al. A defect in COPI-mediated transport of STING causes immune dysregulation in COPA syndrome. J. Exp. Med. 217, e20201045 (2020).
Steiner, A. et al. Deficiency in coatomer complex I causes aberrant activation of STING signalling. Nat. Commun. 13, 2321 (2022).
Lepelley, A. et al. Mutations in COPA lead to abnormal trafficking of STING to the Golgi and interferon signaling. J. Exp. Med. 2020;217:e20200600.
Agarwal, A. K. et al. PSMB8 encoding the β5i proteasome subunit is mutated in joint contractures, muscle atrophy, microcytic anemia, and panniculitis-induced lipodystrophy syndrome. Am. J. Hum. Genet. 87, 866–872 (2010).
Garg, A. et al. An autosomal recessive syndrome of joint contractures, muscular atrophy, microcytic anemia, and panniculitis-associated lipodystrophy. J. Clin. Endocrinol. Metab. 95, E58–E63 (2010).
Kitamura, A. et al. A mutation in the immunoproteasome subunit PSMB8 causes autoinflammation and lipodystrophy in humans. J. Clin. Invest. 121, 4150–4160 (2011).
Arima, K. et al. Proteasome assembly defect due to a proteasome subunit beta type 8 (PSMB8) mutation causes the autoinflammatory disorder, Nakajo-Nishimura syndrome. Proc. Natl Acad. Sci. USA 108, 14914–14919 (2011).
Meuwissen, M. E. et al. Human USP18 deficiency underlies type 1 interferonopathy leading to severe pseudo-TORCH syndrome. J. Exp. Med. 213, 1163–1174 (2016).
Duncan, C.J.A. et al. Severe type I interferonopathy and unrestrained interferon signaling due to a homozygous germline mutation in STAT2. Sci. Immunol. 4, eaav7501 (2019).
Zhang, X. et al. Human intracellular ISG15 prevents interferon-α/β over-amplification and auto-inflammation. Nature 517, 89–93 (2015).
Gruber, C. et al. Homozygous STAT2 gain-of-function mutation by loss of USP18 activity in a patient with type I interferonopathy. J. Exp. Med. 217, e20192319 (2020).
Becker, L. L. et al. Interferon receptor dysfunction in a child with malignant atrophic papulosis and CNS involvement. Lancet Neurol. 21, 682–686 (2022).
Trinchieri, G. Type I interferon: friend or foe? J. Exp. Med. 207, 2053–2063 (2010).
Capobianchi, M. R., Uleri, E., Caglioti, C. & Dolei, A. Type I IFN family members: similarity, differences and interaction. Cytokine Growth Factor. Rev. 26, 103–111 (2015).
Bave, U. et al. FcγRIIa is expressed on natural IFN-α-producing cells (plasmacytoid dendritic cells) and is required for the IFN-α production induced by apoptotic cells combined with lupus IgG. J. Immunol. 171, 3296–3302 (2003).
Fitzgerald, K. A. & Kagan, J. C. Toll-like receptors and the control of immunity. Cell 180, 1044–1066 (2020).
Moody, K. L., Uccellini, M. B., Avalos, A. M., Marshak-Rothstein, A. & Viglianti, G. A. Toll-like receptor-dependent immune complex activation of B cells and dendritic cells. Methods Mol. Biol. 1390, 249–272 (2016).
Yum, S., Li, M., Fang, Y. & Chen, Z. J. TBK1 recruitment to STING activates both IRF3 and NF-κB that mediate immune defense against tumors and viral infections. Proc. Natl Acad. Sci. USA 118, e2100225118 (2021).
Davidson, S. et al. Protein kinase R is an innate immune sensor of proteotoxic stress via accumulation of cytoplasmic IL-24. Sci. Immunol. 7, eabi6763 (2022).
Grouard, G., Durand, I., Filgueira, L., Banchereau, J. & Liu, Y. J. Dendritic cells capable of stimulating T cells in germinal centres. Nature 384, 364–367 (1996).
Brown, G. J. et al. TLR7 gain-of-function genetic variation causes human lupus. Nature 605, 349–356 (2022).
Stremenova Spegarova, J. et al. A de novo TLR7 gain-of-function mutation causing severe monogenic lupus in an infant. J. Clin. Invest. 134, e179193 (2024).
David, C. et al. Interface gain-of-function mutations in TLR7 cause systemic and neuro-inflammatory disease. J. Clin. Immunol. 44, 60 (2024).
Park, S. H. et al. Type I interferons and the cytokine TNF cooperatively reprogram the macrophage epigenome to promote inflammatory activation. Nat. Immunol. 18, 1104–1116 (2017).
Schoggins, J. W. Interferon-stimulated genes: what do they all do? Annu. Rev. Virol. 6, 567–584 (2019).
Durham, G. A., Williams, J. J. L., Nasim, M. T. & Palmer, T. M. Targeting SOCS proteins to control JAK-STAT signalling in disease. Trends Pharmacol. Sci. 40, 298–308 (2019).
Linossi, E. M. & Nicholson, S. E. Kinase inhibition, competitive binding and proteasomal degradation: resolving the molecular function of the suppressor of cytokine signaling (SOCS) proteins. Immunol. Rev. 266, 123–133 (2015).
Hermann, M. & Bogunovic, D. ISG15: in sickness and in health. Trends Immunol. 38, 79–93 (2017).
Ivashkiv, L. B. IFNγ: signalling, epigenetics and roles in immunity, metabolism, disease and cancer immunotherapy. Nat. Rev. Immunol. 18, 545–558 (2018).
Mishra, B. & Ivashkiv, L. B. Interferons and epigenetic mechanisms in training, priming and tolerance of monocytes and hematopoietic progenitors. Immunol. Rev. 323, 257–275 (2024).
Ganal, S. C. et al. Priming of natural killer cells by nonmucosal mononuclear phagocytes requires instructive signals from commensal microbiota. Immunity 37, 171–186 (2012).
Abt, M. C. et al. Commensal bacteria calibrate the activation threshold of innate antiviral immunity. Immunity 37, 158–170 (2012).
Gough, D. J., Messina, N. L., Clarke, C. J., Johnstone, R. W. & Levy, D. E. Constitutive type I interferon modulates homeostatic balance through tonic signaling. Immunity 36, 166–174 (2012).
Barrat, F. J., Crow, M. K. & Ivashkiv, L. B. Interferon target-gene expression and epigenomic signatures in health and disease. Nat. Immunol. 20, 1574–1583 (2019).
Qiao, Y. et al. Synergistic activation of inflammatory cytokine genes by interferon-gamma-induced chromatin remodeling and toll-like receptor signaling. Immunity 39, 454–469 (2013).
Leung, Y. T. et al. Interferon regulatory factor 1 and histone H4 acetylation in systemic lupus erythematosus. Epigenetics 10, 191–199 (2015).
Crow, Y. J. et al. Characterization of human disease phenotypes associated with mutations in TREX1, RNASEH2A, RNASEH2B, RNASEH2C, SAMHD1, ADAR, and IFIH1. Am. J. Med. Genet. A 167A, 296–312 (2015).
Crow, Y. J. et al. Cree encephalitis is allelic with Aicardi-Goutieres syndrome: implications for the pathogenesis of disorders of interferon α metabolism. J. Med. Genet. 40, 183–187 (2003).
Rice, G. I. et al. Mutations involved in Aicardi-Goutieres syndrome implicate SAMHD1 as regulator of the innate immune response. Nat. Genet. 41, 829–832 (2009).
Rice, G. I. et al. Mutations in ADAR1 cause Aicardi-Goutieres syndrome associated with a type I interferon signature. Nat. Genet. 44, 1243–1248 (2012).
Rice, G. I. et al. Gain-of-function mutations in IFIH1 cause a spectrum of human disease phenotypes associated with upregulated type I interferon signaling. Nat. Genet. 46, 503–509 (2014).
Uggenti, C. et al. cGAS-mediated induction of type I interferon due to inborn errors of histone pre-mRNA processing. Nat. Genet. 52, 1364–1372 (2020).
Piccoli, C. et al. Late-onset Aicardi-Goutières syndrome: a characterization of presenting clinical features. Pediatr. Neurol. 115, 1–6 (2021).
Livingston, J. H. et al. A type I interferon signature identifies bilateral striatal necrosis due to mutations in ADAR1. J. Med. Genet. 51, 76–82 (2014).
Rice, G. I. et al. Genetic, phenotypic, and interferon biomarker status in ADAR1-related neurological disease. Neuropediatrics 48, 166–184 (2017).
Crow, Y. J. et al. Mutations in ADAR1, IFIH1, and RNASEH2B presenting as spastic paraplegia. Neuropediatrics 45, 386–393 (2014).
Garau, J. et al. Molecular genetics and interferon signature in the Italian Aicardi Goutières syndrome cohort: report of 12 new cases and literature review. J. Clin. Med. 8, 750 (2019).
Ramesh, V. et al. Intracerebral large artery disease in Aicardi-Goutieres syndrome implicates SAMHD1 in vascular homeostasis. Dev. Med. Child. Neurol. 52, 725–732 (2010).
Thiele, H. et al. Cerebral arterial stenoses and stroke: novel features of Aicardi-Goutieres syndrome caused by the Arg164X mutation in SAMHD1 are associated with altered cytokine expression. Hum. Mutat. 31, E1836–E1850 (2010).
Xin, B. et al. Homozygous mutation in SAMHD1 gene causes cerebral vasculopathy and early onset stroke. Proc. Natl Acad. Sci. USA 108, 5372–5377 (2011).
Cattalini, M. et al. Exploring autoimmunity in a cohort of children with genetically confirmed Aicardi-Goutieres syndrome. J. Clin. Immunol. 36, 693–699 (2016).
Gavazzi, F. et al. Hepatic involvement in Aicardi-Goutieres syndrome. Neuropediatrics 52, 441–447 (2021).
Ramantani, G. et al. Expanding the phenotypic spectrum of lupus erythematosus in Aicardi-Goutieres syndrome. Arthritis Rheum. 62, 1469–1477 (2010).
Samanta, D., Ramakrishnaiah, R., Crary, S. E., Sukumaran, S. & Burrow, T. A. Multiple autoimmune disorders in Aicardi-Goutieres syndrome. Pediatr. Neurol. 96, 37–39 (2019).
Naesens, L. et al. Mutations in RNU7-1 weaken secondary RNA structure, induce MCP-1 and CXCL10 in CSF, and result in Aicardi-Goutieres syndrome with severe end-organ involvement. J. Clin. Immunol. 42, 962–974 (2022).
Akwa, Y. et al. Transgenic expression of IFN-α in the central nervous system of mice protects against lethal neurotropic viral infection but induces inflammation and neurodegeneration. J. Immunol. 161, 5016–5026 (1998).
Stetson, D. B., Ko, J. S., Heidmann, T. & Medzhitov, R. Trex1 prevents cell-intrinsic initiation of autoimmunity. Cell 134, 587–598 (2008).
Thomas, C. A. et al. Modeling of TREX1-dependent autoimmune disease using human stem cells highlights L1 accumulation as a source of neuroinflammation. Cell Stem Cell 21, 319–331.e8 (2017).
Lee, K. et al. Inverted Alu repeats: friends or foes in the human transcriptome. Exp. Mol. Med. 56, 1250–1262 (2024).
Hasler, J. & Strub, K. Alu elements as regulators of gene expression. Nucleic Acids Res. 34, 5491–5497 (2006).
Ahmad, S. et al. Breaching self-tolerance to alu duplex RNA underlies MDA5-mediated inflammation. Cell 172, 797–810 e13 (2018).
Ochoa, E. et al. Pathogenic tau-induced transposable element-derived dsRNA drives neuroinflammation. Sci. Adv. 9, eabq5423 (2023).
Dorrity, T. J. et al. Long 3’UTRs predispose neurons to inflammation by promoting immunostimulatory double-stranded RNA formation. Sci. Immunol. 8, eadg2979 (2023).
Cecco, M. et al. L1 drives IFN in senescent cells and promotes age-associated inflammation. Nature 566, 73–78 (2019).
Baldwin, E. T. et al. Structures, functions and adaptations of the human LINE-1 ORF2 protein. Nature 626, 194–206 (2024).
Hedges, D. J. et al. Differential alu mobilization and polymorphism among the human and chimpanzee lineages. Genome Res. 14, 1068–1075 (2004).
Cordaux, R. & Batzer, M. A. The impact of retrotransposons on human genome evolution. Nat. Rev. Genet. 10, 691–703 (2009).
Hormozdiari, F. et al. Rates and patterns of great ape retrotransposition. Proc. Natl Acad. Sci. USA 110, 13457–13462 (2013).
Bass, B. L. RNA editing by adenosine deaminases that act on RNA. Annu. Rev. Biochem. 71, 817–846 (2002).
Nishikura, K. Functions and regulation of RNA editing by ADAR deaminases. Annu. Rev. Biochem. 79, 321–349 (2010).
Höss, M. et al. A human DNA editing enzyme homologous to the Escherichia coli DnaQ/MutD protein. EMBO J. 18, 3868–3875 (1999).
Kim, S. H., Kim, G. H., Kemp, M. G. & Choi, J. H. TREX1 degrades the 3’ end of the small DNA oligonucleotide products of nucleotide excision repair in human cells. Nucleic Acids Res. 50, 3974–3984 (2022).
Li, P. et al. Aicardi-Goutieres syndrome protein TREX1 suppresses L1 and maintains genome integrity through exonuclease-independent ORF1p depletion. Nucleic Acids Res. 45, 4619–4631 (2017).
Richards, A. et al. C-terminal truncations in human 3’-5’ DNA exonuclease TREX1 cause autosomal dominant retinal vasculopathy with cerebral leukodystrophy. Nat. Genet. 39, 1068–1070 (2007).
Zhao, K. et al. LINE1 contributes to autoimmunity through both RIG-I- and MDA5-mediated RNA sensing pathways. J. Autoimmun. 90, 105–115 (2018).
Reijns, M. A. et al. The structure of the human RNase H2 complex defines key interaction interfaces relevant to enzyme function and human disease. J. Biol. Chem. 286, 10530–10539 (2011).
Olivares, M., Garcia-Perez, J. L., Thomas, M. C., Heras, S. R. & Lopez, M. C. The non-LTR (long terminal repeat) retrotransposon L1Tc from Trypanosoma cruzi codes for a protein with RNase H activity. J. Biol. Chem. 277, 28025–28030 (2002).
Piskareva, O. & Schmatchenko, V. DNA polymerization by the reverse transcriptase of the human L1 retrotransposon on its own template in vitro. FEBS Lett. 580, 661–668 (2006).
Heuzé, J. et al. RNase H2 degrades toxic RNA:DNA hybrids behind stalled forks to promote replication restart. EMBO J. 42, e113104 (2023).
Zhitai, H. et al. RNA polymerase drives ribonucleotide excision DNA repair in E. coli. Cell 186, 2425–2437 (2023).
García-Muse, T. & Aguilera, A. R loops: from physiological to pathological roles. Cell 179, 604–618 (2019).
Mankan, K. et al. Cytosolic RNA:DNA hybrids activate the cGAS–STING axis. EMBO J. 33, 2937–2946 (2014).
Cristini, A. et al. RNase H2, mutated in Aicardi-Goutieres syndrome, resolves co-transcriptional R-loops to prevent DNA breaks and inflammation. Nat. Commun. 13, 2961 (2022).
Lahouassa, H. et al. SAMHD1 restricts the replication of human immunodeficiency virus type 1 by depleting the intracellular pool of deoxynucleoside triphosphates. Nat. Immunol. 13, 223–228 (2012).
Beloglazova, N. et al. Nuclease activity of the human SAMHD1 protein implicated in the Aicardi-Goutieres syndrome and HIV-1 restriction. J. Biol. Chem. 288, 8101–8110 (2013).
Maharana, S. et al. SAMHD1 controls innate immunity by regulating condensation of immunogenic self RNA. Mol. Cell 82, 3712–3728 e10 (2022).
Hu, S. et al. SAMHD1 inhibits LINE-1 retrotransposition by promoting stress granule formation. PLoS Genet. 11, e1005367 (2015).
Grand, M. G. et al. Cerebroretinal vasculopathy. A new hereditary syndrome. Ophthalmology 95, 649–659 (1988).
Storimans, C. W., Van Schooneveld, M. J., Oosterhuis, J. A. & Bos, P. J. A new autosomal dominant vascular retinopathy syndrome. Eur. J. Ophthalmol. 1, 73–78 (1991).
Cohn, A. C., Kotschet, K., Veitch, A., Delatycki, M. B. & McCombe, M. F. Novel ophthalmological features in hereditary endotheliopathy with retinopathy, nephropathy and stroke syndrome. Clin. Exp. Ophthalmol. 33, 181–183 (2005).
Hasan, M. et al. Cytosolic nuclease TREX1 regulates oligosaccharyltransferase activity independent of nuclease activity to suppress immune activation. Immunity 43, 463–474 (2015).
Lee-Kirsch, M. A. et al. A mutation in TREX1 that impairs susceptibility to granzyme A-mediated cell death underlies familial chilblain lupus. J. Mol. Med. 85, 531–537 (2007).
Ravenscroft, J. C., Suri, M., Rice, G. I., Szynkiewicz, M. & Crow, Y. J. Autosomal dominant inheritance of a heterozygous mutation in SAMHD1 causing familial chilblain lupus. Am. J. Med. Genet. A 155A, 235–237 (2011).
Konig, N. et al. Familial chilblain lupus due to a gain-of-function mutation in STING. Ann. Rheum. Dis. 76, 468–472 (2017).
Gay, B. B. Jr & Kuhn, J. P. A syndrome of widened medullary cavities of bone, aortic calcification, abnormal dentition, and muscular weakness (the Singleton-Merten syndrome). Radiology 118, 389–395 (1976).
Riou, M. C. et al. Oral phenotype of Singleton-Merten syndrome: a systematic review illustrated with a case report. Front. Genet. 13, 875490 (2022).
Bursztejn, A. C. et al. Unusual cutaneous features associated with a heterozygous gain-of-function mutation in IFIH1: overlap between Aicardi-Goutieres and Singleton-Merten syndromes. Br. J. Dermatol. 173, 1505–1513 (2015).
de Carvalho, L. M. et al. Musculoskeletal disease in MDA5-related type I interferonopathy: a mendelian mimic of Jaccoud’s arthropathy. Arthritis Rheumatol. 69, 2081–2091 (2017).
Jang, M. A. et al. Mutations in DDX58, which encodes RIG-I, cause atypical Singleton-Merten syndrome. Am. J. Hum. Genet. 96, 266–274 (2015).
Lee-Kirsch, M. A. et al. Mutations in the gene encoding the 3’-5’ DNA exonuclease TREX1 are associated with systemic lupus erythematosus. Nat. Genet. 39, 1065–1067 (2007).
Günther, C. et al. Defective removal of ribonucleotides from DNA promotes systemic autoimmunity. J. Clin. Invest. 125, 413–424 (2015).
Melki, I. et al. Disease-associated mutations identify a novel region in human STING necessary for the control of type I interferon signaling. J. Allergy Clin. Immunol. 140, 543–552 e5 (2017).
Lin, B. et al. Case report: novel SAVI-causing variants in STING1 expand the clinical disease spectrum and suggest a refined model of STING activation. Front. Immunol. 12, 636225 (2021).
Lin, B. et al. A novel STING1 variant causes a recessive form of STING-associated vasculopathy with onset in infancy (SAVI). J. Allergy Clin. Immunol. 146, 1204–1208 e6 (2020).
Watkin, L. B. et al. COPA mutations impair ER-Golgi transport and cause hereditary autoimmune-mediated lung disease and arthritis. Nat. Genet. 47, 654–660 (2015).
Munoz, J. et al. Stimulator of interferon genes-associated vasculopathy with onset in infancy : a mimic of childhood granulomatosis with polyangiitis. JAMA Dermatol. 151, 872–877 (2015).
Omoyinmi, E. et al. Stimulator of interferon genes-associated vasculitis of infancy. Arthritis Rheumatol. 67, 808 (2015).
Chia, J. et al. Failure to thrive, interstitial lung disease, and progressive digital necrosis with onset in infancy. J. Am. Acad. Dermatol. 74, 186–189 (2016).
Munoz, J. et al. Stimulator of interferon genes-associated vasculopathy with onset in infancy: a mimic of childhood granulomatosis with polyangiitis. JAMA Dermatol. 151, 872–877 (2015).
Seo, J. et al. Tofacitinib relieves symptoms of stimulator of interferon genes (STING)-associated vasculopathy with onset in infancy caused by 2 de novo variants in TMEM173. J. Allergy Clin. Immunol. 139, 1396–1399 e12 (2017).
Picard, C. et al. Severe pulmonary fibrosis as the first manifestation of interferonopathy (TMEM173 mutation). Chest 150, e65–e71 (2016).
Fremond, M. L. et al. Brief report: blockade of TANK-binding kinase 1/IKKvarε inhibits mutant stimulator of interferon genes (STING)-mediated inflammatory responses in human peripheral blood mononuclear cells. Arthritis Rheumatol. 69, 1495–1501 (2017).
Jensson, B. O. et al. COPA syndrome in an Icelandic family caused by a recurrent missense mutation in COPA. BMC Med. Genet. 18, 129 (2017).
Volpi, S. et al. Type I interferon pathway activation in COPA syndrome. Clin. Immunol. 187, 33–36 (2018).
Tsui, J. L. et al. Analysis of pulmonary features and treatment approaches in the COPA syndrome. ERJ Open Res. 4, 00017-2018 (2018).
Noorelahi, R., Perez, G. & Otero, H. J. Imaging findings of Copa syndrome in a 12-year-old boy. Pediatr. Radiol. 48, 279–282 (2018).
Fremond, M. L. et al. Overview of STING-associated vasculopathy with onset in infancy (SAVI) among 21 patients. J. Allergy Clin. Immunol. Pract. 9, 803–818 e11 (2021).
Vece, T. J. et al. Copa syndrome: a novel autosomal dominant immune dysregulatory disease. J. Clin. Immunol. 36, 377–387 (2016).
Taveira-DaSilva, A. M. et al. Expanding the phenotype of COPA syndrome: a kindred with typical and atypical features. J. Med. Genet. 56, 778–782 (2018).
Lodi, L. et al. Type I interferon-related kidney disorders. Kidney Int. 101, 1142–1159 (2022).
Fremond, M. L. & Crow, Y. J. STING-mediated lung inflammation and beyond. J. Clin. Immunol. 41, 501–514 (2021).
Ahn, J., Gutman, D., Saijo, S. & Barber, G. N. STING manifests self DNA-dependent inflammatory disease. Proc. Natl Acad. Sci. USA 109, 19386–19391 (2012).
Wu, J. et al. Cyclic GMP-AMP is an endogenous second messenger in innate immune signaling by cytosolic DNA. Science 339, 826–830 (2013).
Zhang, C. et al. Structural basis of STING binding with and phosphorylation by TBK1. Nature 567, 394–398 (2019).
Tanaka, Y. & Chen, Z. J. STING specifies IRF3 phosphorylation by TBK1 in the cytosolic DNA signaling pathway. Sci. Signal. 5, ra20 (2012).
Abe, T. & Barber, G. N. Cytosolic-DNA-mediated, STING-dependent proinflammatory gene induction necessitates canonical NF-κB activation through TBK1. J. Virol. 88, 5328–5341 (2014).
Ishikawa, H. & Barber, G. N. STING is an endoplasmic reticulum adaptor that facilitates innate immune signalling. Nature 455, 674–678 (2008).
Jeltema, D., Abbott, K. & Yan, N. STING trafficking as a new dimension of immune signaling. J. Exp. Med. 220, e20220990 (2023).
Zhang, B. C. et al. STEEP mediates STING ER exit and activation of signaling. Nat. Immunol. 21, 868–879 (2020).
Prakriya, M. & Lewis, R. S. Store-operated calcium channels. Physiol. Rev. 95, 1383–1436 (2015).
Srikanth, S. et al. The Ca2+ sensor STIM1 regulates the type I interferon response by retaining the signaling adaptor STING at the endoplasmic reticulum. Nat. Immunol. 20, 152–162 (2019).
Schekman, R. & Orci, L. Coat proteins and vesicle budding. Science 271, 1526–1533 (1996).
Hirschenberger, M. et al. ARF1 prevents aberrant type I interferon induction by regulating STING activation and recycling. Nat. Commun. 14, 6770 (2023).
Ishida, M. et al. A neurodevelopmental disorder associated with an activating de novo missense variant in ARF1. Hum. Mol. Genet. 32, 1162–1174 (2023).
Liu, Y. et al. Clathrin-associated AP-1 controls termination of STING signalling. Nature 610, 761–767 (2022).
Ji, Y. et al. SEL1L-HRD1 endoplasmic reticulum-associated degradation controls STING-mediated innate immunity by limiting the size of the activable STING pool. Nat. Cell Biol. 25, 726–739 (2023).
Liu, B. et al. Human STING is a proton channel. Science 381, 508–514 (2023).
Domizio, J. D. et al. The cGAS-STING pathway drives type I IFN immunopathology in COVID-19. Nature 603, 145–151 (2022).
Bailey, S. L., Harvey, S., Perrino, F. W. & Hollis, T. Defects in DNA degradation revealed in crystal structures of TREX1 exonuclease mutations linked to autoimmune disease. DNA Repair. 11, 65–73 (2012).
Huang, L. S. et al. mtDNA activates cGAS signaling and suppresses the YAP-mediated endothelial cell proliferation program to promote inflammatory injury. Immunity 52, 475–486.e5 (2020).
Lubawy, J., Chowański, S., Adamski, Z. & Słocińska, M. Mitochondria as a target and central hub of energy division during cold stress in insects. Front. Zool. 19, 1 (2022).
Luksch, H. et al. STING-associated lung disease in mice relies on T cells but not type I interferon. J. Allergy Clin. Immunol. 144, 254–266.e8 (2019).
Lertkiatmongkol, P., Liao, D., Mei, H., Hu, Y. & Newman, P. J. Endothelial functions of platelet/endothelial cell adhesion molecule-1 (CD31). Curr. Opin. Hematol. 23, 253–259 (2016).
Chatfield, S. M., Thieblemont, N. & Witko-Sarsat, V. Expanding neutrophil horizons: new concepts in inflammation. J. Innate Immun. 10, 422–431 (2018).
Frisch, S. M. & MacFawn, I. P. Type I interferons and related pathways in cell senescence. Aging Cell 19, e13234 (2020).
Ferrington, D. A. & Gregerson, D. S. Immunoproteasomes: structure, function, and antigen presentation. Prog. Mol. Biol. Transl. Sci. 109, 75–112 (2012).
Liu, Y. et al. Mutations in proteasome subunit β type 8 cause chronic atypical neutrophilic dermatosis with lipodystrophy and elevated temperature with evidence of genetic and phenotypic heterogeneity. Arthritis Rheum. 64, 895–907 (2012).
de Jesus, A. A. et al. Novel proteasome assembly chaperone mutations in PSMG2/PAC2 cause the autoinflammatory interferonopathy CANDLE/PRAAS4. J. Allergy Clin. Immunol. 143, 1939–1943.e8 (2019).
Brehm, A. et al. Additive loss-of-function proteasome subunit mutations in CANDLE/PRAAS patients promote type I IFN production. J. Clin. Invest. 125, 4196–4211 (2015).
Poli, M. C. et al. Heterozygous truncating variants in POMP escape nonsense-mediated decay and cause a unique immune dysregulatory syndrome. Am. J. Hum. Genet. 102, 1126–1142 (2018).
Kataoka, S. et al. Successful treatment of a novel type I interferonopathy due to a de novo PSMB9 gene mutation with a Janus kinase inhibitor. J. Allergy Clin. Immunol. 148, 639–644 (2021).
van der Made, C. I. et al. Expanding the PRAAS spectrum: de novo mutations of immunoproteasome subunit β-type 10 in six infants with SCID-Omenn syndrome.Am. J. Hum. Genet. 111, 791–804 (2024).
Alehashemi, S. et al. A de novo dominant-negative PSMB8 mutation is linked to a more severe CANDLE-like phenotype [abstract]. Arthritis Rheumatol. 74 (suppl. 9), abstract number 1936 (2022).
Ansar, M. et al. Biallelic variants in PSMB1 encoding the proteasome subunit beta6 cause impairment of proteasome function, microcephaly, intellectual disability, developmental delay and short stature. Hum. Mol. Genet. 29, 1132–1143 (2020).
Kury, S. et al. De novo disruption of the proteasome regulatory subunit PSMD12 causes a syndromic neurodevelopmental disorder. Am. J. Hum. Genet. 100, 352–363 (2017).
Khalil, R. et al. PSMD12 haploinsufficiency in a neurodevelopmental disorder with autistic features. Am. J. Med. Genet. B Neuropsychiatr. Genet. 177, 736–745 (2018).
Isidor, B. et al. Stankiewicz-Isidor syndrome: expanding the clinical and molecular phenotype. Genet. Med. 24, 179–191 (2022).
Zhang, H. et al. PSMD12 promotes the activation of the MEK-ERK pathway by upregulating KIF15 to promote the malignant progression of liver cancer. Cancer Biol. Ther. 23, 1–11 (2022).
Deb, W. et al. PSMD11 loss-of-function variants correlate with a neurobehavioral phenotype, obesity, and increased interferon response. Am. J. Hum. Genet. 11, 1352–1369 (2024).
Aharoni, S. et al. PSMC1 variant causes a novel neurological syndrome. Clin. Genet. 102, 324–332 (2022).
Kroll-Hermi, A. et al. Proteasome subunit PSMC3 variants cause neurosensory syndrome combining deafness and cataract due to proteotoxic stress. EMBO Mol. Med. 12, e11861 (2020).
Küry, S. et al. Unveiling the crucial neuronal role of the proteasomal ATPase subunit gene PSMC5 in neurodevelopmental proteasomopathies. Preprint at medRxiv https://doi.org/10.1101/2024.01.13.24301174 (2024).
Kanazawa, N. Nakajo-Nishimura syndrome: an autoinflammatory disorder showing pernio-like rashes and progressive partial lipodystrophy. Allergol. Int. 61, 197–206 (2012).
Buchbinder, D., Montealegre Sanchez, G. A., Goldbach-Mansky, R., Brunner, H. & Shulman, A. I. Rash, fever, and pulmonary hypertension in a 6-year-old female. Arthritis Care Res. 70, 785–790 (2018).
Sanchez, G. A. M. et al. JAK1/2 inhibition with baricitinib in the treatment of autoinflammatory interferonopathies. J. Clin. Invest. 128, 3041–3052 (2018).
Al-Mayouf, S. M. et al. Monogenic interferonopathies: phenotypic and genotypic findings of CANDLE syndrome and its overlap with C1q deficient SLE. Int. J. Rheum. Dis. 21, 208–213 (2018).
Torrelo, A. et al. Chronic atypical neutrophilic dermatosis with lipodystrophy and elevated temperature (CANDLE) syndrome. J. Am. Acad. Dermatol. 62, 489–495 (2010).
Yamazaki-Nakashimada, M. A. et al. Systemic autoimmunity in a patient with CANDLE syndrome. J. Investig. Allergol. Clin. Immunol. 29, 75–76 (2019).
Gamez-Diaz, L. et al. The extended phenotype of LPS-responsive beige-like anchor protein (LRBA) deficiency. J. Allergy Clin. Immunol. 137, 223–230 (2016).
Kanazawa, N. et al. Heterozygous missense variant of the proteasome subunit β-type 9 causes neonatal-onset autoinflammation and immunodeficiency. Nat. Commun. 12, 6819 (2021).
Papendorf, J. J., Kruger, E. & Ebstein, F. Proteostasis perturbations and their roles in causing sterile inflammation and autoinflammatory diseases. Cells 11, 1422 (2022).
Goldberg, A. L. Functions of the proteasome: from protein degradation and immune surveillance to cancer therapy. Biochem. Soc. Trans. 35, 12–17 (2007).
Yim, W. W. & Mizushima, N. Lysosome biology in autophagy. Cell Discov. 6, 6 (2020).
Suraweera, A., Munch, C., Hanssum, A. & Bertolotti, A. Failure of amino acid homeostasis causes cell death following proteasome inhibition. Mol. Cell 48, 242–253 (2012).
Kloetzel, P. M. Antigen processing by the proteasome. Nat. Rev. Mol. Cell Biol. 2, 179–187 (2001).
Rock, K. L., York, I. A., Saric, T. & Goldberg, A. L. Protein degradation and the generation of MHC class I-presented peptides. Adv. Immunol. 80, 1–70 (2002).
Griffin, T. A. et al. Immunoproteasome assembly: cooperative incorporation of interferon gamma (IFN-γ)-inducible subunits. J. Exp. Med. 187, 97–104 (1998).
Kingsbury, D. J., Griffin, T. A. & Colbert, R. A. Novel propeptide function in 20S proteasome assembly influences β subunit composition. J. Biol. Chem. 275, 24156–24162 (2000).
Papendorf, J. J. et al. Identification of eight novel proteasome variants in five unrelated cases of proteasome-associated autoinflammatory syndromes (PRAAS). Front. Immunol. 14, 1190104 (2023).
Murata, S., Yashiroda, H. & Tanaka, K. Molecular mechanisms of proteasome assembly. Nat. Rev. Mol. Cell Biol. 10, 104–115 (2009).
Kuehn, L. & Dahlmann, B. Proteasome activator PA28 and its interaction with 20S proteasomes. Arch. Biochem. Biophys. 329, 87–96 (1996).
Di Cola, D. Human erythrocyte contains a factor that stimulates the peptidase activities of multicatalytic proteinase complex. Ital. J. Biochem. 41, 213–224 (1992).
Pepelnjak, M. et al. Systematic identification of 20S proteasome substrates. Mol. Syst. Biol. 20, 403–427 (2024).
Baugh, J. M. & Pilipenko, E. V. 20S proteasome differentially alters translation of different mRNAs via the cleavage of eIF4F and eIF3. Mol. Cell. 16, 575–586 (2004).
Steffen, J., Seeger, M., Koch, A. & Kruger, E. Proteasomal degradation is transcriptionally controlled by TCF11 via an ERAD-dependent feedback loop. Mol. Cell 40, 147–158 (2010).
Zhao, C. et al. Multiple roles of the stress sensor GCN2 in immune cells. Int. J. Mol. Sci. 24, 4285 (2023).
Jaud, M. et al. Translational regulations in response to endoplasmic reticulum stress in cancers. Cells 9, 540 (2020).
Willemsen, N., Arigoni, I., Studencka-Turski, M., Kruger, E. & Bartelt, A. Proteasome dysfunction disrupts adipogenesis and induces inflammation via ATF3. Mol. Metab. 62, 101518 (2022).
Bardag-Gorce, F. et al. Mallory bodies formed in proteasome-depleted hepatocytes: an immunohistochemical study. Exp. Mol. Pathol. 70, 7–18 (2001).
Ebstein, F. et al. PSMC3 proteasome subunit variants are associated with neurodevelopmental delay and type I interferon production. Sci. Transl. Med. 15, eabo3189 (2023).
Sun, C. et al. An abundance of free regulatory (19S) proteasome particles regulates neuronal synapses. Science 380, eadf2018 (2023).
Kim, J. W. et al. Pharmacological modulation of AMPA receptor rescues social impairments in animal models of autism. Neuropsychopharmacology 44, 314–323 (2019).
Zhu, G. et al. Type I interferonopathy due to a homozygous loss-of-inhibitory function mutation in STAT2. J. Clin. Immunol. 43, 808–818 (2023).
Alsohime, F. et al. JAK inhibitor therapy in a child with inherited USP18 deficiency. N. Engl. J. Med. 382, 256–265 (2020).
Martin-Fernandez, M. et al. Systemic Type I IFN inflammation in human ISG15 deficiency leads to necrotizing skin lesions. Cell Rep. 31, 107633 (2020).
Bogunovic, D. et al. Mycobacterial disease and impaired IFN-gamma immunity in humans with inherited ISG15 deficiency. Science 337, 1684–1688 (2012).
Martin-Fernandez, M. et al. A partial form of inherited human USP18 deficiency underlies infection and inflammation. J. Exp. Med. 219, e20211273 (2022).
Lisnevskaia, L., Murphy, G. & Isenberg, D. Systemic lupus erythematosus. Lancet 384, 1878–1888 (2014).
Justiz Vaillant, A. A., Goyal, A., Varacallo, M. Systemic Lupus Erythematosus (StatPearls, 2023).
Belot, A. et al. Contribution of rare and predicted pathogenic gene variants to childhood-onset lupus: a large, genetic panel analysis of British and French cohorts. Lancet Rheumatol. 2, e99–e109 (2020).
Caielli, S., Wan, Z. & Pascual, V. Systemic lupus erythematosus pathogenesis: interferon and beyond. Annu. Rev. Immunol. 41, 533–560 (2023).
Pisetsky, D. S. & Lipsky, P. E. New insights into the role of antinuclear antibodies in systemic lupus erythematosus. Nat. Rev. Rheumatol. 16, 565–579 (2020).
Al-Mayouf, S. M. et al. Loss-of-function variant in DNASE1L3 causes a familial form of systemic lupus erythematosus. Nat. Genet. 43, 1186–1188 (2011).
Pac Kisaarslan, A. et al. Refractory and fatal presentation of severe autoimmune hemolytic anemia in a child with the DNASE1L3 mutation complicated with an additional DOCK8 variant. J. Pediatr. Hematol. Oncol. 43, e452–e456 (2021).
Tusseau, M. et al. DNASE1L3 deficiency, new phenotypes, and evidence for a transient type I IFN signaling. J. Clin. Immunol. 42, 1310–1320 (2022).
Yasutomo, K. et al. Mutation of DNASE1 in people with systemic lupus erythematosus. Nat. Genet. 28, 313–314 (2001).
Almitairi, J. O. M. et al. Structure of the C1r-C1s interaction of the C1 complex of complement activation. Proc. Natl Acad. Sci. USA 115, 768–773 (2018).
Ramirez-Ortiz, Z. G. et al. The scavenger receptor SCARF1 mediates the clearance of apoptotic cells and prevents autoimmunity. Nat. Immunol. 14, 917–926 (2013).
Wicker-Planquart, C. et al. Molecular and cellular interactions of scavenger receptor SR-F1 with complement C1q provide insights into its role in the clearance of apoptotic cells. Front. Immunol. 11, 544 (2020).
Santocki M, Kolaczkowska E. On neutrophil extracellular trap (NET) removal: what we know thus far and why so little. Cells 9, 2079 (2020).
Klickstein, L. B., Barbashov, S. F., Liu, T., Jack, R. M. & Nicholson-Weller, A. Complement receptor type 1 (CR1, CD35) is a receptor for C1q. Immunity 7, 345–355 (1997).
Whaley, K., Ahmed, A. E. Control of immune complexes by the classical pathway. Behring Inst. Mitt. 111–120 (1989).
Santer, D. M., Wiedeman, A. E., Teal, T. H., Ghosh, P. & Elkon, K. B. Plasmacytoid dendritic cells and C1q differentially regulate inflammatory gene induction by lupus immune complexes. J. Immunol. 188, 902–915 (2012).
Spivia, W., Magno, P. S., Le, P. & Fraser, D. A. Complement protein C1q promotes macrophage anti-inflammatory M2-like polarization during the clearance of atherogenic lipoproteins. Inflamm. Res. 63, 885–893 (2014).
Fraser, D. A. et al. C1q and MBL, components of the innate immune system, influence monocyte cytokine expression. J. Leukoc. Biol. 80, 107–116 (2006).
Botto, M. et al. Homozygous C1q deficiency causes glomerulonephritis associated with multiple apoptotic bodies. Nat. Genet. 19, 56–59 (1998).
Martin, M. & Blom, A. M. Complement in removal of the dead — balancing inflammation. Immunol. Rev. 274, 218–232 (2016).
Sisirak, V. et al. Digestion of chromatin in apoptotic cell microparticles prevents autoimmunity. Cell 166, 88–101 (2016).
Serpas, L. et al. Dnase1l3 deletion causes aberrations in length and end-motif frequencies in plasma DNA. Proc. Natl Acad. Sci. USA 116, 641–649 (2019).
Soni, C. et al. Plasmacytoid dendritic cells and type I interferon promote extrafollicular B cell responses to extracellular self-DNA. Immunity 52, 1022–1038.e7 (2020).
Trouw, L. A. et al. Anti-C1q autoantibodies deposit in glomeruli but are only pathogenic in combination with glomerular C1q-containing immune complexes. J. Clin. Invest. 114, 679–688 (2004).
Stojan, G. & Petri, M. Anti-C1q in systemic lupus erythematosus. Lupus 25, 873–877 (2016).
Hartl, J. et al. Autoantibody-mediated impairment of DNASE1L3 activity in sporadic systemic lupus erythematosus. J. Exp. Med. 218, e20201138 (2021).
Siegert, C. E. et al. Autoantibodies against C1q: view on clinical relevance and pathogenic role. Clin. Exp. Immunol. 116, 4–8 (1999).
Trendelenburg, M. Autoantibodies against complement component C1q in systemic lupus erythematosus. Clin. Transl. Immunol. 10, e1279 (2021).
Gomez-Banuelos, E. et al. Affinity maturation generates pathogenic antibodies with dual reactivity to DNase1L3 and dsDNA in systemic lupus erythematosus. Nat. Commun. 14, 1388 (2023).
Wolf, C. et al. UNC93B1 variants underlie TLR7-dependent autoimmunity. Sci. Immunol. 9, eadi9769 (2024).
Xie, C. et al. De novo PACSIN1 gene variant found in childhood lupus and a role for PACSIN1/TRAF4 complex in toll-like receptor 7 activation. Arthritis Rheumatol. 75, 1058–1071 (2023).
Kim, Y. M., Brinkmann, M. M., Paquet, M. E. & Ploegh, H. L. UNC93B1 delivers nucleotide-sensing toll-like receptors to endolysosomes. Nature 452, 234–238 (2008).
Jensen, S. & Thomsen, A. R. Sensing of RNA viruses: a review of innate immune receptors involved in recognizing RNA virus invasion. J. Virol. 86, 2900–2910 (2012).
Mishra, H. et al. Disrupted degradative sorting of TLR7 is associated with human lupus. Sci. Immunol. 9, eadi9575 (2024).
Al-Azab, M. et al. Genetic variants in UNC93B1 predispose to childhood-onset systemic lupus erythematosus. Nat. Immunol. 25, 969–980 (2024).
David, C. et al. Gain-of-function human UNC93B1 variants cause systemic lupus erythematosus and chilblain lupus. J. Exp. Med. 221, e20232066 (2024).
Rael, V. E. et al. Large-scale mutational analysis identifies UNC93B1 variants that drive TLR-mediated autoimmunity in mice and humans. J. Exp. Med. 221, e20232005 (2024).
Pisitkun, P. et al. Autoreactive B cell responses to RNA-related antigens due to TLR7 gene duplication. Science 312, 1669–1672 (2006).
Subramanian, S. et al. A Tlr7 translocation accelerates systemic autoimmunity in murine lupus. Proc. Natl Acad. Sci. USA 103, 9970–9975 (2006).
Li, S., Yao, J. C., Li, J. T., Schmidt, A. P. & Link, D. C. TLR7/8 agonist treatment induces an increase in bone marrow resident dendritic cells and hematopoietic progenitor expansion and mobilization. Exp. Hematol. 96, 35–43.e7 (2021).
Lood, C., Arve, S., Ledbetter, J. & Elkon, K. B. TLR7/8 activation in neutrophils impairs immune complex phagocytosis through shedding of FcgRIIA. J. Exp. Med. 214, 2103–2119 (2017).
Belot, A. et al. Protein kinase cδ deficiency causes mendelian systemic lupus erythematosus with B cell-defective apoptosis and hyperproliferation. Arthritis Rheum. 65, 2161–2171 (2013).
He, Y. et al. P2RY8 variants in lupus patients uncover a role for the receptor in immunological tolerance. J. Exp. Med. 219, e20211004 (2022).
Miyamoto, A. et al. Increased proliferation of B cells and auto-immunity in mice lacking protein kinase Cδ. Nature 416, 865–869 (2002).
Nehar-Belaid, D. et al. Mapping systemic lupus erythematosus heterogeneity at the single-cell level. Nat. Immunol. 21, 1094–1106 (2020).
Blanco, P., Palucka, A. K., Gill, M., Pascual, V. & Banchereau, J. Induction of dendritic cell differentiation by IFN-α in systemic lupus erythematosus. Science 294, 1540–1543 (2001).
Lazzaretto, B. & Fadeel, B. Intra- and extracellular degradation of neutrophil extracellular traps by macrophages and dendritic cells. J. Immunol. 203, 2276–2290 (2019).
Becker, Y. et al. Anti-mitochondrial autoantibodies in systemic lupus erythematosus and their association with disease manifestations. Sci. Rep. 9, 4530 (2019).
Lood, C. et al. Neutrophil extracellular traps enriched in oxidized mitochondrial DNA are interferogenic and contribute to lupus-like disease. Nat. Med. 22, 146–153 (2016).
Caielli, S. et al. Oxidized mitochondrial nucleoids released by neutrophils drive type I interferon production in human lupus. J. Exp. Med. 213, 697–713 (2016).
Garcia-Romo, G. S. et al. Netting neutrophils are major inducers of type I IFN production in pediatric systemic lupus erythematosus. Sci. Transl. Med. 3, 73ra20 (2011).
Caielli, S. et al. Erythroid mitochondrial retention triggers myeloid-dependent type I interferon in human SLE. Cell 184, 4464–4479.e19 (2021).
Newman, L. E. & Shadel, G. S. Mitochondrial DNA release in innate immune signaling. Annu. Rev. Biochem. 92, 299–332 (2023).
Hooftman, A. et al. Macrophage fumarate hydratase restrains mtRNA-mediated interferon production. Nature 615, 490–498 (2023).
Zecchini, V. et al. Fumarate induces vesicular release of mtDNA to drive innate immunity. Nature 615, 499–506 (2023).
Briggs, T. A. et al. Tartrate-resistant acid phosphatase deficiency causes a bone dysplasia with autoimmunity and a type I interferon expression signature. Nat. Genet. 43, 127–131 (2011).
Chan, M. P. et al. DNase II-dependent DNA digestion is required for DNA sensing by TLR9. Nat. Commun. 6, 5853 (2015).
Hong, Y. et al. Janus kinase inhibition for autoinflammation in patients with DNASE2 deficiency. J. Allergy Clin. Immunol. 145, 701–705.e8 (2020).
Basu, S. et al. A young boy with rash, arthritis, and developmental delay: monogenic lupus due to DNASE2 gene defect. Int. J. Rheum. Dis. 26, 2599–2602 (2023).
Del Bel, K. L. et al. JAK1 gain-of-function causes an autosomal dominant immune dysregulatory and hypereosinophilic syndrome. J. Allergy Clin. Immunol. 139, 2016–2020.e5 (2017).
Gruber, C. N. et al. Complex autoinflammatory syndrome unveils fundamental principles of JAK1 kinase transcriptional and biochemical function. Immunity 53, 672–684.e11 (2020).
Uzel, G. et al. Dominant gain-of-function STAT1 mutations in FOXP3 wild-type immune dysregulation-polyendocrinopathy-enteropathy-X-linked-like syndrome. J. Allergy Clin. Immunol. 131, 1611–1623 (2013).
Lee, P. Y. et al. Immune dysregulation and multisystem inflammatory syndrome in children (MIS-C) in individuals with haploinsufficiency of SOCS1. J. Allergy Clin. Immunol. 146, 1194–1200.e1 (2020).
Xue, C. et al. Evolving cognition of the JAK-STAT signaling pathway: autoimmune disorders and cancer. Signal. Transduct. Target. Ther. 8, 204 (2023).
Chen, L. et al. Comparison of disease phenotypes and mechanistic insight on causal variants in patients with DADA2. J. Allergy Clin. Immunol. 152, 771–782 (2023).
Dhanwani, R. et al. Cellular sensing of extracellular purine nucleosides triggers an innate IFN-β response. Sci. Adv. 6, eaba3688 (2020).
Malle, L. et al. Autoimmunity in Down’s syndrome via cytokines, CD4 T cells and CD11c+ B cells. Nature 615, 305–314 (2023).
Malewicz, M. et al. Essential role for DNA-PK-mediated phosphorylation of NR4A nuclear orphan receptors in DNA double-strand break repair. Genes. Dev. 25, 2031–2040 (2011).
Gul, E. et al. Type I IFN-related NETosis in ataxia telangiectasia and Artemis deficiency. J. Allergy Clin. Immunol. 142, 246–257 (2018).
Klein, B. & Gunther, C. Type I interferon induction in cutaneous DNA damage syndromes. Front. Immunol. 12, 715723 (2021).
Starokadomskyy, P. et al. DNA polymerase-α regulates the activation of type I interferons through cytosolic RNA:DNA synthesis. Nat. Immunol. 17, 495–504 (2016).
Meyts, I. & Casanova, J. L. A human inborn error connects the alpha’s. Nat. Immunol. 17, 472–474 (2016).
Hussain, M. et al. Skin abnormalities in disorders with DNA repair defects, premature aging, and mitochondrial dysfunction. J. Invest. Dermatol. 141, 968–975 (2021).
Lopriore, P., Gomes, F., Montano, V., Siciliano, G. & Mancuso, M. Mitochondrial epilepsy, a challenge for neurologists. Int. J. Mol. Sci. 23, 13216 (2022).
Lepelley, A. et al. Enhanced cGAS-STING-dependent interferon signaling associated with mutations in ATAD3A. J. Exp. Med. 218, e20201560 (2021).
Crow, Y. J. & Stetson, D. B. The type I interferonopathies: 10 years on. Nat. Rev. Immunol. 22, 471–483 (2022).
Meffre, E., & O’Connor, K. C. Impaired B-cell tolerance checkpoints promote the development of autoimmune diseases and pathogenic autoantibodies. Immunol. Rev. 292, 90–101 (2019).
Oikonomou, V. et al. The role of interferon-γ in autoimmune polyendocrine syndrome type 1. N. Engl. J. Med. 390, 1873–1884 (2024).
Zanussi, J. T. et al. Clinical diagnoses associated with a positive antinuclear antibody test in patients with and without autoimmune disease. BMC Rheumatol. 7, 24 (2023).
Orme, M. E., Voreck, A., Aksouh, R., Ramsey-Goldman, R. & Schreurs, M. W. J. Systematic review of anti-dsDNA testing for systemic lupus erythematosus: a meta-analysis of the diagnostic test specificity of an anti-dsDNA fluorescence enzyme immunoassay. Autoimmun. Rev. 20, 102943 (2021).
Sakakibara, S. et al. Clonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus. Sci. Rep. 7, 16428 (2017).
Santacruz, J. C. et al. A practical perspective of the hematologic manifestations of systemic lupus erythematosus. Cureus 14, e22938 (2022).
Kanagal-Shamanna, R., Beck, D. B. & Calvo, K. R. Clonal hematopoiesis, inflammation, and hematologic malignancy. Annu. Rev. Pathol. 19, 479–506 (2024).
Gallo, G. R., Caulin-Glaser, T. & Lamm, M. E. Charge of circulating immune complexes as a factor in glomerular basement membrane localization in mice. J. Clin. Invest. 67, 1305–1313 (1981).
Du, H., Chen, M., Zhang, Y., Zhao, M. H. & Wang, H. Y. Cross-reaction of anti-DNA autoantibodies with membrane proteins of human glomerular mesangial cells in sera from patients with lupus nephritis. Clin. Exp. Immunol. 145, 21–27 (2006).
Paul, E. et al. Pathogenic anti-DNA antibodies in SLE: idiotypic families and genetic origins. Int. Rev. Immunol. 5, 295–313 (1990).
Sasaki, T. et al. Heterogeneity of immune complex-derived anti-DNA antibodies associated with lupus nephritis. Kidney Int. 39, 746–753 (1991).
Davies, K. A. et al. Clearance pathways of soluble immune complexes in the pig. Insights into the adaptive nature of antigen clearance in humans. J. Immunol. 155, 5760–5768 (1995).
Ji, H. et al. Arthritis critically dependent on innate immune system players. Immunity 16, 157–168 (2002).
Deocharan, B., Qing, X., Lichauco, J. & Putterman, C. α-Actinin is a cross-reactive renal target for pathogenic anti-DNA antibodies. J. Immunol. 168, 3072–3078 (2002).
The American College of Rheumatology nomenclature and case definitions for neuropsychiatric lupus syndromes. Arthritis Rheum. 42, 599–608 (1999).
DeGiorgio, L. A. et al. A subset of lupus anti-DNA antibodies cross-reacts with the NR2 glutamate receptor in systemic lupus erythematosus. Nat. Med. 7, 1189–1193 (2001).
Molero-Luis, M. et al. Cerebrospinal fluid neopterin as a biomarker of neuroinflammatory diseases. Sci. Rep. 10, 18291 (2020).
Choi, E. K., Gatenby, P. A., Bateman, J. F. & Cole, W. G. Antibodies to type II collagen in SLE: a role in the pathogenesis of deforming arthritis? Immunol. Cell Biol. 68, 27–31 (1990).
Santiago, M. B. Jaccoud-type lupus arthropathy. Lupus 31, 398–406 (2022).
Kim, H., Sanchez, G. A. & Goldbach-Mansky, R. Insights from mendelian interferonopathies: comparison of CANDLE, SAVI with AGS, monogenic lupus. J. Mol. Med. 94, 1111–1127 (2016).
Northcott, M. et al. Type 1 interferon status in systemic lupus erythematosus: a longitudinal analysis. Lupus Sci. Med. 9, e000625 (2022).
Rodero, M. P. et al. Detection of interferon alpha protein reveals differential levels and cellular sources in disease. J. Exp. Med. 214, 1547–1555 (2017).
Vanderver, A. et al. Janus kinase inhibition in the Aicardi-Goutieres syndrome. N. Engl. J. Med. 383, 986–989 (2020).
Rice, G. I. et al. Assessment of interferon-related biomarkers in Aicardi-Goutieres syndrome associated with mutations in TREX1, RNASEH2A, RNASEH2B, RNASEH2C, SAMHD1, and ADAR: a case-control study. Lancet Neurol. 12, 1159–1169 (2013).
Rice, G. I. et al. Assessment of type I interferon signaling in pediatric inflammatory disease. J. Clin. Immunol. 37, 123–132 (2017).
Huijser, E. et al. Serum interferon-α2 measured by single-molecule array associates with systemic disease manifestations in Sjogren’s syndrome. Rheumatology 61, 2156–2166 (2022).
Baechler, E. C. et al. Interferon-inducible gene expression signature in peripheral blood cells of patients with severe lupus. Proc. Natl Acad. Sci. USA 100, 2610–2615 (2003).
Bennett, L. et al. Interferon and granulopoiesis signatures in systemic lupus erythematosus blood. J. Exp. Med. 197, 711–723 (2003).
Kim, H. et al. Development of a validated interferon score using nanostring technology. J. Interferon Cytokine Res. 38, 171–185 (2018).
de Jesus, A. A. et al. Distinct interferon signatures and cytokine patterns define additional systemic autoinflammatory diseases. J. Clin. Invest. 130, 1669–1682 (2020).
Hadjadj, J. et al. Impaired type I interferon activity and inflammatory responses in severe COVID-19 patients. Science 369, 718–724 (2020).
Viengkhou, B. & Hofer, M. J. Breaking down the cellular responses to type I interferon neurotoxicity in the brain. Front. Immunol. 14, 1110593 (2023).
Zhang, W., Xiao, D., Mao, Q. & Xia, H. Role of neuroinflammation in neurodegeneration development. Signal. Transduct. Target. Ther. 8, 267 (2023).
Cetin Gedik, K. et al. The 2021 European Alliance of Associations for Rheumatology/American College of Rheumatology points to consider for diagnosis and management of autoinflammatory type I interferonopathies: CANDLE/PRAAS, SAVI and AGS. Ann. Rheum. Dis. 81, 601–613 (2022).
Meesilpavikkai, K. et al. Efficacy of baricitinib in the treatment of chilblains associated with Aicardi-Goutieres syndrome, a type I interferonopathy. Arthritis Rheumatol. 71, 829–831 (2019).
Zimmermann, N. et al. Assessment of clinical response to Janus kinase inhibition in patients with familial chilblain lupus and TREX1 mutation. JAMA Dermatol. 155, 342–346 (2019).
Boyadzhiev, M. et al. Disease course and treatment effects of a JAK inhibitor in a patient with CANDLE syndrome. Pediatr. Rheumatol. Online J. 17, 19 (2019).
Patel, P. N. et al. Successful treatment of chronic atypical neutrophilic dermatosis with lipodystrophy and elevated temperature (CANDLE) syndrome with tofacitinib. Pediatr. Dermatol. 38, 528–529 (2021).
Rice, G. I. et al. Reverse-transcriptase inhibitors in the Aicardi-Goutieres syndrome. N. Engl. J. Med. 379, 2275–2277 (2018).
Gatz, S. A. et al. MCM3AP and POMP mutations cause a DNA-repair and DNA-damage-signaling defect in an immunodeficient child. Hum. Mutat. 37, 257–268 (2016).
Meinhardt, A. et al. Curative treatment of POMP-related autoinflammation and immune dysregulation (PRAID) by hematopoietic stem cell transplantation. J. Clin. Immunol. 41, 1664–1667 (2021).
Martinez, C. et al. HSCT corrects primary immunodeficiency and immune dysregulation in patients with POMP-related autoinflammatory disease. Blood 138, 1896–1901 (2021).
Verhoeven, D. et al. Hematopoietic stem cell transplantation in a patient with proteasome-associated autoinflammatory syndrome (PRAAS). J. Allergy Clin. Immunol. 149, 1120–1127 e8 (2022).
Riggs, J. M. et al. Characterisation of anifrolumab, a fully human anti-interferon receptor antagonist antibody for the treatment of systemic lupus erythematosus. Lupus Sci. Med. 5, e000261 (2018).
Doroudchi, A. & Butte, M. First reported use of anifrolumab to treat a monogenic interferonopathy (DNASE2 loss of function). Clin. Immunol. 250, 109593 (2023).
Mansilla-Polo, M. et al. Successful treatment of stimulator of interferon genes-associated vasculopathy of infantile onset SAVI syndrome with anifrolumab. JAMA Dermatol. 160, 899–901 (2024).
Alehashemi, S. B. A. et al. Anifrolumab normalizes the type I interferon signature in a cohort of patients with type I interferonopathies [abstract]. Arthritis Rheumatol. 75 (suppl. 9), abstract number 2477 (2023).
Thawani, A. et al. Template and target-site recognition by human LINE-1 in retrotransposition. Nature 626, 186–193 (2024).
Acknowledgements
The authors of this Review were supported by the Intramural Research Program of the NIH.
Author information
Authors and Affiliations
Contributions
The authors contributed equally to all aspects of the article.
Corresponding author
Ethics declarations
Competing interests
R.G.M. has a government funded Cooperative Research and Development Agreement that supports translational research with STING inhibitors. S.A. and A.A.D.J. have no relevant competing interests to report.
Peer review
Peer review information
Nature Reviews Rheumatology thanks Alexandre Belot, who co-reviewed with Anne-Laure Mathieu; Min Ae Lee-Kirsch; Ryuta Nishikomori, who co-reviewed with Kazushi Izawa; and the other, anonymous, reviewer(s) for their contribution to the peer review of this work.
Additional information
Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary information
Glossary
- Autosomal-dominant mutation
-
A mutation that is present on one allele (copy) of a given gene.
- Autosomal-recessive mutation
-
A mutation that is present on both alleles (copies) of a given gene.
- Biallelic variants
-
Variants that occur in both copies of a gene; these variants can be homozygous or compound heterozygous.
- Chilblain-like lesions
-
Skin lesions that mimic chilblains or pernio lesions, which are erythematous violaceous lesions, typically macules, papules, or nodules that develop in response to exposure to cold environments and affect mainly the acral areas, particularly toes and fingers.
- Deleterious frameshift mutation
-
A damaging or pathogenic mutation caused by the insertion or deletion of nucleotide bases in numbers that are not multiples of three that disrupt the expected translated amino acid sequence.
- Deleterious null mutation
-
A damaging or pathogenic mutation that leads to the gene not being transcribed into RNA and/or translated into a functional protein product; null mutation is also known as amorphic mutation.
- Digenic mutations
-
Mutations that occur in two genes to manifest a particular phenotype or disease.
- Dominant negative mutation
-
A heterozygous mutation that results in a protein that interferes with the normal function of the wild type protein.
- Heterozygous missense mutation
-
A single nucleotide change in one allele that results in a different amino acid being encoded at a particular position in the resulting protein.
- Hypomorphic X-linked mutation
-
A mutation on a gene on the X chromosome that results in a partial loss of gene function because of a reduction in the expression of RNA or protein, or by a reduction in the functional performance of the gene product; a hypomorphic mutation is also known as a leaky mutation.
- Inborn errors of immunity
-
A group of rare genetically defined immunological disorders with increased susceptibility to immunodeficiency and infections, autoinflammation, autoimmunity, allergy and/or predisposition to lymphomas and other malignancies, mostly because of damaging germline variants in single genes.
- Interferogenic
-
An element or molecule, such as nucleic acids, which triggers an interferon response or induces the expression of interferon stimulated genes.
- Interferon score
-
The quantification of an interferon signature by the sum of z-scores of specific interferon-stimulated gene expression measured by RT–qPCR, NanoString or RNA-sequencing.
- Nonsense mutations
-
Single-nucleotide changes that result in a stop codon rather than in a codon specifying an amino acid, thus leading to the production of a shortened protein.
- Pseudo-TORCH syndromes
-
An inherited neurological disorder with clinical and neuroradiological features that mimic intrauterine toxoplasmosis, others (syphilis, hepatitis B), rubella, cytomegalovirus, herpes simplex (TORCH) infections in the absence of evidence of infection.
- Warm antibodies
-
Autoantibodies that are active only at body temperatures of 37 °C or higher and attach to and prematurely destroy red blood cells.
Rights and permissions
About this article
Cite this article
Goldbach-Mansky, R., Alehashemi, S. & de Jesus, A.A. Emerging concepts and treatments in autoinflammatory interferonopathies and monogenic systemic lupus erythematosus. Nat Rev Rheumatol 21, 22–45 (2025). https://doi.org/10.1038/s41584-024-01184-8
Accepted:
Published:
Issue date:
DOI: https://doi.org/10.1038/s41584-024-01184-8
This article is cited by
-
DADA2 prevalence in China
Nature Reviews Rheumatology (2025)
-
The pathogenesis, clinical presentations and treatment of monogenic systemic vasculitis
Nature Reviews Rheumatology (2025)
-
Treatment and long-term follow-up of pediatric patients with hypocomplementemic urticarial vasculitis syndrome (HUVS): a case-based review
Clinical Rheumatology (2025)
-
Das Immunoproteasom: nicht nur eine Antigen-Prozessierungsmaschine
BIOspektrum (2025)