Extended Data Fig. 10: UMAP visualization of the 56 subtrajectories, coloured by development stage.
From: The single-cell transcriptional landscape of mammalian organogenesis
We further iteratively reanalysed and visualized with UMAP each of the 56 subtrajectories. Although Monocle 3 did not have access to these labels, the subtrajectories are highly consistent with developmental time (that is, cells ordered from E9.5 to E13.5). The lines correspond to the principal graph learned by Monocle 3.
