Extended Data Fig. 11: UMAP visualization of the 56 subtrajectories, coloured by inferred pseudotime.
From: The single-cell transcriptional landscape of mammalian organogenesis
To orient each subtrajectory (same projections as Extended Data Fig. 10), we identified one or several starting points as focal concentrations of E9.5 cells, and then computed developmental pseudotime for cells present along various paths. The lines correspond to the principal graph learned by Monocle 3.
