Extended Data Fig. 7: Differential gene expression in specific fibroblast clusters.
From: Distinct fibroblast subsets drive inflammation and damage in arthritis
a, A set of violin plots showing gene expression (normalized, log-transformed counts of the cells from all of the n = 3 biological replicates, x axes) of additional fibroblast markers in each of the F1–F5 fibroblast clusters (y axes) (corresponds to Fig. 3b). b, t-SNE projection of fibroblasts from the inflamed mouse joint coloured by replicate (corresponds to Fig. 3b). c, A set of violin plots showing gene expression (normalized, log-transformed counts of the cells from all of the n = 3 biological replicates, x axes) of known markers for chemokines in each of the F1–F5 fibroblast clusters (y axes) (corresponds to Fig. 3b). d, Number of cells in each cluster stratified by replicate.
