Extended Data Fig. 4: Cryo-EM map quality of the Ste2–mini-Gpa1–Ste4–Ste18 heterotrimer complex and model validation.
From: Structure of the class D GPCR Ste2 dimer coupled to two G proteins

Unless stated otherwise, densities from map 1 were visualized using UCSF ChimeraX35 (contour level 0.03) and encompass a carve radius of 2 Å around the indicated region. a, Densities of transmembrane helices of Ste2A (contour level 0.045), α-factorB, mini-Gpa1B, dimer interface between Ste2A and Ste2B, intracellular loops ICL1–3 and extracellular loops ECL1–3 are shown as a mesh. Densities of αN and α4–β6 are shown as representative densities from mini-Gpa1A. Densities of Ste4 and Ste18 (contour 0.025) are shown as a mesh at a contour level of 0.01 and a carve radius of 2 Å. b, Two N-acetylglucosamine molecules were modelled attached to Asn25 of SteA and Ste2B and they contribute to the dimer interface (contour level 0.01 from map 2). Asn25 is a well-characterized glycosylation site in Ste217. c, Densities for six ordered putative CHS molecules surrounding the dimer interface were visible and were modelled (contour level 0.01). Several other detergent or lipid acyl-chain densities were visible in the map before detergent micelle signal subtraction, but were left unmodelled. d, FSC of the refined model versus the map (green curve) and FSCwork/FSCfree validation curves (orange and blue curves, respectively).