Extended Data Fig. 2: Data visualization and discovery in yeastepigenome.org.
From: A high-resolution protein architecture of the budding yeast genome
Shown is an example web browser view at yeastepigenome.org of ChIP–exo occupancy patterns for all targets (for example, Reb1) around predefined genomic features. Rows are sorted by gene or promoter (NFR/NDR) length, or by distance from the indicated reference feature (where x = 0). Promoter classes include (from top to bottom) RP, STM, TFO, UNB and others. See Supplementary Data 1 (1G, 1J, 1C) for the identification numbers and coordinates of respective row features, and for the sort order of features that are constant in all target display windows. The lower right box (when present) provides strand-separated tag 5′ ends distributed around the target’s cognate DNA motif, with the motif’s opposite strand (red) inverted in the composite plot. Corresponding colour-coded nucleotide sequences are shown. All images, underlying data values and datasets can be downloaded through embedded ‘META DATA’ target-specific links at yeastepigenome.org. Each dataset download includes a ReadMe file describing the contents of the download. We warn that targets with only a single replicate did not pass our significance threshold. See Supplementary Data 1 (1C) for sort orders that are not provided in the download.
