Extended Data Fig. 7: Phylogenetic trees.
From: Expanded diversity of Asgard archaea and their relationships with eukaryotes
a, Phylogenetic tree of bacteria, archaea and eukaryotes (inferred with IQ-tree using the LG + R10 model) that was constructed from the concatenated alignments of the protein sequences of 30 universally conserved genes (Methods). The tree shows the relationships between the major clades. b, Phylogenetic tree of COG0012 (ribosome-binding ATPase YchF) the tree was reconstructed using IQ-tree with LG + R10 evolutionary model (selected by IQ-tree ModelFinder as the best fit). zc, Phylogenetic tree of COG0201 (preprotein translocase subunit SecY). The tree was reconstructed using IQ-tree with LG + F + R10 evolutionary model (selected by IQ-tree ModelFinder as the best fit). d, Phylogenetic tree of the reduced set of bacteria, archaea and eukaryotes (excluding the genomes of derived parasites), constructed from concatenated alignments of the protein sequences of 29 universal markers (excluding COG0012) using IQ-tree with LG + R10 evolutionary model (selected by IQ-tree ModelFinder as the best fit). The tree shows the relationships between the major clades. e, Phylogenetic analysis of the evolutionary relationship between archaea and eukaryotes, excluding the Asgard superphylum. The tree was reconstructed from a concatenated alignment of the 29 universal markers (excluding COG0012) using IQ-tree with LG + R10 evolutionary model (selected by IQ-tree ModelFinder as the best fit).
