Extended Data Fig. 4: Comparison of PCS values determined during apo and turnover conditions and correlation of PCSs during turnover conditions with the open structure of Adk. | Nature

Extended Data Fig. 4: Comparison of PCS values determined during apo and turnover conditions and correlation of PCSs during turnover conditions with the open structure of Adk.

From: Structure determination of high-energy states in a dynamic protein ensemble

Extended Data Fig. 4

(a) Overlay of PCS values obtained for apo and Mg2+ADP conditions. Values were determined from [1H-15N]-HSQC comparison in Zn2+ and Co2+ states. Note the sizable loss of PCS in the apo state compared to the closed state, indicating a more open structure in the absence of ligand. (b) Difference in PCS values for apo and turnover conditions. Large absolute differences of > 0.1 ppm are observed for many residues. (c) Zoom in of [1H-15N]-HSQC spectra in either 20 mM Mg2+ADP or apo conditions of Co2+ Adk. Noticeable line broadening is observed for apo conditions. (d) Fit of open state (4AKE68) to observed PCS shift data during catalytic turnover. (e) Best-fit tensor for PCS to open state structure. (f) Calculated PCSs for open state structure when fit with observed PCSs. A poor fit is found as the observed PCSs do not report on the open state structure. (g) The PCS difference expected between the open and closed state structures. Differences of |0.5 ppm| or greater would be expected for residues in AMP lid and core domain near the ATP lid.

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