Extended Data Fig. 8: Position of conserved residues in Ste2 conformational states. | Nature

Extended Data Fig. 8: Position of conserved residues in Ste2 conformational states.

From: Activation mechanism of the class D fungal GPCR dimer Ste2

Extended Data Fig. 8

a, In Ste2•Ant, a water molecule makes a polar interaction with the main chain of Asn2055x29, whilst in the Ste2AL•Ag state this site is occupied by Tyr2666x58, which undergoes a rotamer change to form a polar interaction with the side chain of Asn2055x29. The rotamer change in Tyr2666x58 is triggered by its interaction with Trp1 of α-factor. Atomic models of Ste2 in the antagonist (map threshold 0.013) or agonist-bound active-like state (map threshold 0.560) are shown in pale brown, and the antagonist or agonist α-factor is shown as sticks in purple. b, Two putative sterol molecules, putatively assigned as CHS (purple), were found juxtaposed to H7 in the inactive state Ste2•Ant (map threshold 0.010) but there was no density in this region in the active state Ste2AL•Ag (map threshold 0.560). Note that there were densities corresponding to sterols in other positions adjacent to the intracellular half of the receptor, but these were not modelled as the densities were not sufficiently resolved. c, On activation, changes in the dimer interface are accompanied by a relative shift of protomer Ste2B by ~3 Å towards the protomer Ste2A. The models of Ste2•Ant, Ste2A•Ag•G and Ste2B•Ag•G are shown in grey, blue and green, respectively. d, The conserved LPLSSMWA motif (residues 2897x49-2967x56) on H7 is kinked inwards towards the receptor core in Ste2•Ant but forms an α-helix in Ste2•Ag•G. e, The inactive state (Ste2•Ant) is stabilized by a hydrogen bond formed between Q1493x50 and S2927x52. Upon activation (Ste2•Ag•G), Leu2897x49 packs against Ile802x42 allowing Leu2897x49 to interact with Ile471H5.25 of the G protein α-subunit Gpa1. A hydrophobic core formed by Ile802x42, Leu2897x49, and Ile471H5.25 replace the polar lock present in the inactive state. f, The conserved Pro2586x50 causes a kink in H6 in the inactive state. g, The side chain of Gln2536x45 interacts with Trp2957x55 of the LPLSSMWA motif in the inactive state, but undergoes a 180° flip upon activation as Gln2536x45 moves towards Ser2887x48 and Trp2957x55 moves away to enable H7 to interact with H1 and H7 of the adjacent protomer. h, The conserved positively charged residues in TM5 (Lys2255x49 and Arg2335x57) undergo side chain changes upon activation to enable Gpa1 α5-helix binding and forms polar and ionic interactions with Gpa1.

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